Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RHS38_RS15925 Genome accession   NZ_CP133891
Coordinates   3403541..3404653 (-) Length   370 a.a.
NCBI ID   WP_085609512.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3398541..3409653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS15895 (RHS38_15895) hemF 3399001..3399918 (-) 918 WP_029806385.1 oxygen-dependent coproporphyrinogen oxidase -
  RHS38_RS15900 (RHS38_15900) - 3399966..3400523 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  RHS38_RS15905 (RHS38_15905) purE 3400723..3401208 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RHS38_RS15910 (RHS38_15910) - 3401213..3402346 (+) 1134 WP_031845718.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RHS38_RS15915 (RHS38_15915) - 3402410..3402979 (-) 570 WP_064484123.1 type I DNA topoisomerase -
  RHS38_RS15920 (RHS38_15920) - 3403059..3403538 (-) 480 WP_005461440.1 DUF494 family protein -
  RHS38_RS15925 (RHS38_15925) dprA 3403541..3404653 (-) 1113 WP_085609512.1 DNA-processing protein DprA Machinery gene
  RHS38_RS15930 (RHS38_15930) - 3404637..3405731 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  RHS38_RS15935 (RHS38_15935) def 3405870..3406388 (+) 519 WP_005461416.1 peptide deformylase -
  RHS38_RS15940 (RHS38_15940) fmt 3406422..3407369 (+) 948 WP_064484121.1 methionyl-tRNA formyltransferase -
  RHS38_RS15945 (RHS38_15945) rsmB 3407450..3408733 (+) 1284 WP_057619664.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39936.56 Da        Isoelectric Point: 6.5005

>NTDB_id=877403 RHS38_RS15925 WP_085609512.1 3403541..3404653(-) (dprA) [Vibrio parahaemolyticus strain M0904]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQTGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=877403 RHS38_RS15925 WP_085609512.1 3403541..3404653(-) (dprA) [Vibrio parahaemolyticus strain M0904]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTAGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAACGGGTGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGCTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCGAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACTTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.865

100

0.849
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

38.363

100

0.405
  dprA Neisseria meningitidis MC58

38.363

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.247

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

35.99

100

0.378