Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RHS38_RS02935 Genome accession   NZ_CP133891
Coordinates   598655..599878 (-) Length   407 a.a.
NCBI ID   WP_085610073.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593655..604878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS02895 (RHS38_02895) rpsP 593769..594017 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  RHS38_RS02900 (RHS38_02900) rimM 594046..594594 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  RHS38_RS02905 (RHS38_02905) trmD 594622..595365 (+) 744 WP_005446247.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RHS38_RS02910 (RHS38_02910) rplS 595407..595760 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  RHS38_RS02915 (RHS38_02915) yacG 596075..596269 (-) 195 WP_031845920.1 DNA gyrase inhibitor YacG -
  RHS38_RS02920 (RHS38_02920) zapD 596338..597078 (-) 741 WP_015297254.1 cell division protein ZapD -
  RHS38_RS02925 (RHS38_02925) coaE 597106..597720 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  RHS38_RS02930 (RHS38_02930) pilD 597721..598590 (-) 870 WP_057619578.1 A24 family peptidase Machinery gene
  RHS38_RS02935 (RHS38_02935) pilC 598655..599878 (-) 1224 WP_085610073.1 type II secretion system F family protein Machinery gene
  RHS38_RS02940 (RHS38_02940) pilB 599903..601588 (-) 1686 WP_085610072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RHS38_RS02945 (RHS38_02945) - 601588..602046 (-) 459 WP_025613046.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RHS38_RS02950 (RHS38_02950) nadC 602310..603197 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RHS38_RS02955 (RHS38_02955) ampD 603290..603841 (+) 552 WP_005479703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45264.44 Da        Isoelectric Point: 10.4368

>NTDB_id=877384 RHS38_RS02935 WP_085610073.1 598655..599878(-) (pilC) [Vibrio parahaemolyticus strain M0904]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAITKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=877384 RHS38_RS02935 WP_085610073.1 598655..599878(-) (pilC) [Vibrio parahaemolyticus strain M0904]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTTAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACTGGTGTGCCACTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAGGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACTTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGTGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGTTCCATCAGTTTATTTATATCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGTTTAATGCTCAACCGATCTGTACTTAAGTTTCCAGTCCTTGGGGCGGT
TTTATCGAAAGCCGCTATCACAAAATTTAGTCGAACACTCGCTACGAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGAGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTTCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAGCCATTGATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.995

100

0.86
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilC Legionella pneumophila strain ERS1305867

39.558

100

0.396