Detailed information NTG0877383

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RHS38_RS02930
• Genome accession: NZ_CP133891
• Coordinates: 597721..598590 (-)
• Length: 289 a.a.
• NCBI ID: WP_057619578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain M0904
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 592721..603590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS38_RS02895 (RHS38_02895)	rpsP	593769..594017 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
RHS38_RS02900 (RHS38_02900)	rimM	594046..594594 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
RHS38_RS02905 (RHS38_02905)	trmD	594622..595365 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
RHS38_RS02910 (RHS38_02910)	rplS	595407..595760 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
RHS38_RS02915 (RHS38_02915)	yacG	596075..596269 (-)	195	WP_031845920.1	DNA gyrase inhibitor YacG	-
RHS38_RS02920 (RHS38_02920)	zapD	596338..597078 (-)	741	WP_015297254.1	cell division protein ZapD	-
RHS38_RS02925 (RHS38_02925)	coaE	597106..597720 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
RHS38_RS02930 (RHS38_02930)	pilD	597721..598590 (-)	870	WP_057619578.1	A24 family peptidase	Machinery gene
RHS38_RS02935 (RHS38_02935)	pilC	598655..599878 (-)	1224	WP_085610073.1	type II secretion system F family protein	Machinery gene
RHS38_RS02940 (RHS38_02940)	pilB	599903..601588 (-)	1686	WP_085610072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RHS38_RS02945 (RHS38_02945)	-	601588..602046 (-)	459	WP_025613046.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
RHS38_RS02950 (RHS38_02950)	nadC	602310..603197 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32421.44 Da
• Isoelectric Point: 6.4652

>NTDB_id=877383 RHS38_RS02930 WP_057619578.1 597721..598590(-) (pilD) [Vibrio parahaemolyticus strain M0904]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSEPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSIVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=877383 RHS38_RS02930 WP_057619578.1 597721..598590(-) (pilD) [Vibrio parahaemolyticus strain M0904]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAGGTTTTGACATTAAGCGAGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCATCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCGATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446