Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RF667_RS01250 Genome accession   NZ_CP133786
Coordinates   209644..210885 (+) Length   413 a.a.
NCBI ID   WP_003574280.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain KCKM 0245     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 204644..215885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF667_RS01230 (RF667_01230) yfmH 205644..206936 (+) 1293 WP_016385451.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RF667_RS01235 (RF667_01235) ymfI 206936..207664 (+) 729 WP_003574277.1 elongation factor P 5-aminopentanone reductase -
  RF667_RS01240 (RF667_01240) - 207751..208680 (+) 930 WP_003574279.1 helix-turn-helix domain-containing protein -
  RF667_RS01245 (RF667_01245) pgsA 208677..209270 (+) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RF667_RS01250 (RF667_01250) cinA 209644..210885 (+) 1242 WP_003574280.1 competence/damage-inducible protein A Machinery gene
  RF667_RS01255 (RF667_01255) recA 210942..212003 (+) 1062 WP_003574281.1 recombinase RecA Machinery gene
  RF667_RS01260 (RF667_01260) rny 212298..213869 (+) 1572 WP_003657913.1 ribonuclease Y -
  RF667_RS01265 (RF667_01265) - 213963..214613 (-) 651 WP_003574282.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44342.69 Da        Isoelectric Point: 6.0028

>NTDB_id=876819 RF667_RS01250 WP_003574280.1 209644..210885(+) (cinA) [Lacticaseibacillus paracasei strain KCKM 0245]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARVKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSSHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMI
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=876819 RF667_RS01250 WP_003574280.1 209644..210885(+) (cinA) [Lacticaseibacillus paracasei strain KCKM 0245]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGTCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGCGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCGAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCAGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGATC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCTGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.887

100

0.533
  cinA Streptococcus mitis SK321

51.773

100

0.53
  cinA Streptococcus pneumoniae TIGR4

51.415

100

0.528
  cinA Streptococcus mutans UA159

52.174

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.943

100

0.523
  cinA Streptococcus pneumoniae R6

50.943

100

0.523
  cinA Streptococcus pneumoniae D39

50.708

100

0.521
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.328

91.525

0.387