Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RHM56_RS21260 Genome accession   NZ_CP133778
Coordinates   4881589..4882962 (-) Length   457 a.a.
NCBI ID   WP_322235807.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4876589..4887962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS21245 (RHM56_21245) - 4878102..4879676 (-) 1575 WP_322235801.1 AAA family ATPase -
  RHM56_RS21250 (RHM56_21250) aroB 4879687..4880787 (-) 1101 WP_322235803.1 3-dehydroquinate synthase -
  RHM56_RS21255 (RHM56_21255) aroK 4881066..4881584 (-) 519 WP_322235805.1 shikimate kinase AroK -
  RHM56_RS21260 (RHM56_21260) pilQ 4881589..4882962 (-) 1374 WP_322235807.1 type IV pilus secretin PilQ family protein Machinery gene
  RHM56_RS21265 (RHM56_21265) - 4882975..4883505 (-) 531 WP_322235809.1 pilus assembly protein PilP -
  RHM56_RS21270 (RHM56_21270) - 4883502..4884125 (-) 624 WP_322235811.1 type 4a pilus biogenesis protein PilO -
  RHM56_RS21275 (RHM56_21275) - 4884122..4884688 (-) 567 WP_322235813.1 PilN domain-containing protein -
  RHM56_RS21280 (RHM56_21280) pilM 4884688..4885644 (-) 957 WP_322235815.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49357.45 Da        Isoelectric Point: 4.7837

>NTDB_id=876675 RHM56_RS21260 WP_322235807.1 4881589..4882962(-) (pilQ) [Pseudomonas sp. CCC3.1]
MKRIFPVCGLALWSALNSLSVLAVVQHSALVNPTISAPNPVYTGEKVSLNFQAIEVRTVLQLLADFTQFNLVVSDAVQGS
ITLNLQDVPWDQALDLVLKSKDLGKRLEGNVLLIAPSEELAARERYELEARNQLAELAPLRRELVQVNYAKAADIAKLFQ
SVTDGQTSEDARGSITVDERTNNIIAFQSGAQLDELRRIVAQLDVPVRQVMIEARIVEAGVDFERNLGVRWGGSLNKGGK
WSAGGITQATGAGGEAGNMSAPFVDMGVKGNTSGLGIAFISNNVLLDLELSAMEKTGNGEIISQPKVVTSDKETAKILKG
TEIPYQESSSSGATSVSFKEASLSLEVTPQITPDSSVIMEVVVTKDEPDYMNMVNNVPPIKKNEVQAKVLVKDGETIVIG
GVFSNTQSKVVDKVPFLGDLPYVGRLFRNDAVLEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=876675 RHM56_RS21260 WP_322235807.1 4881589..4882962(-) (pilQ) [Pseudomonas sp. CCC3.1]
ATGAAAAGGATTTTCCCGGTCTGCGGACTGGCGCTATGGAGTGCGCTGAATTCGCTGTCGGTGCTGGCTGTGGTCCAGCA
TTCGGCCCTTGTAAACCCAACCATTAGCGCGCCGAACCCGGTGTATACCGGGGAGAAAGTGTCGCTGAACTTCCAAGCCA
TTGAAGTGCGCACGGTGCTTCAGTTATTGGCAGATTTCACCCAATTTAACCTGGTGGTCAGCGACGCCGTGCAAGGCAGT
ATTACCCTCAACTTGCAGGATGTGCCGTGGGATCAGGCGCTGGACCTGGTGCTTAAAAGCAAAGACCTCGGCAAGCGTCT
CGAAGGCAATGTGCTGCTGATTGCCCCGTCTGAAGAATTAGCCGCCCGAGAGCGATATGAATTGGAGGCGCGCAATCAAT
TGGCTGAACTGGCTCCTTTGCGGCGCGAGCTGGTGCAAGTCAATTACGCCAAAGCGGCAGACATCGCTAAGTTGTTCCAG
TCCGTGACTGACGGCCAGACCAGCGAGGACGCGCGTGGCTCGATCACTGTCGACGAGCGCACCAACAACATCATCGCGTT
CCAGTCTGGCGCGCAGCTGGACGAGTTGCGGCGCATCGTGGCGCAACTGGATGTGCCGGTACGTCAGGTGATGATCGAGG
CCCGCATCGTGGAAGCGGGCGTCGACTTTGAGCGCAATCTGGGCGTGCGCTGGGGCGGTTCCTTGAACAAGGGGGGCAAA
TGGAGCGCAGGCGGTATTACCCAGGCAACTGGGGCGGGGGGTGAGGCCGGGAATATGAGTGCGCCTTTTGTCGACATGGG
GGTCAAGGGCAATACCTCGGGGTTGGGCATCGCTTTTATCTCCAACAATGTCTTGCTGGACCTGGAACTGAGCGCGATGG
AAAAAACCGGCAACGGTGAAATCATCTCTCAGCCCAAAGTGGTCACCTCCGACAAAGAAACAGCCAAAATCCTTAAAGGC
ACCGAAATTCCCTATCAAGAGTCCAGCTCCAGCGGTGCCACGTCGGTGTCGTTCAAGGAGGCCTCGCTGTCGCTGGAGGT
GACACCGCAAATCACCCCGGACAGCAGCGTCATTATGGAGGTGGTGGTTACCAAGGATGAGCCGGATTACATGAACATGG
TCAATAACGTGCCGCCGATCAAAAAGAACGAGGTGCAGGCCAAGGTGCTGGTCAAGGACGGCGAAACCATCGTAATCGGC
GGTGTGTTCTCAAATACTCAAAGCAAAGTGGTAGATAAAGTGCCATTTTTGGGCGATCTGCCGTATGTTGGCCGACTTTT
CCGTAATGACGCTGTCCTGGAAAAAAAATCCGAGCTGCTGGTGTTCCTGACTCCGCGTATCATGAACAACCAGGCGATTG
CTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(144-209)

Bacterial type II and III secretion system protein (Secretin)

(292-448)

Secretin and TonB N terminus short domain (STN)

(69-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

69.773

96.28

0.672
  comQ Acinetobacter baylyi ADP1

45.595

99.344

0.453
  pilQ Acinetobacter baumannii strain A118

42.526

100

0.442
  pilQ Acinetobacter baumannii D1279779

42.526

100

0.442
  pilQ Legionella pneumophila strain Lp02

45.368

92.123

0.418
  pilQ Legionella pneumophila strain ERS1305867

45.346

91.685

0.416
  pilQ Vibrio campbellii strain DS40M4

43.262

92.56

0.4
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.75

91.028

0.398
  pilQ Vibrio cholerae strain A1552

43.75

91.028

0.398