Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RFN65_RS12105 Genome accession   NZ_CP133703
Coordinates   2382913..2383692 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain CP35     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2377913..2388692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS12075 (RFN65_12075) fliH 2377931..2378683 (-) 753 WP_024572494.1 flagellar assembly protein FliH -
  RFN65_RS12080 (RFN65_12080) fliG 2378676..2379692 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  RFN65_RS12085 (RFN65_12085) fliF 2379705..2381315 (-) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  RFN65_RS12090 (RFN65_12090) fliE 2381361..2381681 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  RFN65_RS12095 (RFN65_12095) flgC 2381692..2382144 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  RFN65_RS12100 (RFN65_12100) flgB 2382144..2382533 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  RFN65_RS12105 (RFN65_12105) codY 2382913..2383692 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RFN65_RS12110 (RFN65_12110) hslU 2383732..2385135 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  RFN65_RS12115 (RFN65_12115) clpQ 2385152..2385697 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  RFN65_RS12120 (RFN65_12120) xerC 2385710..2386624 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  RFN65_RS12125 (RFN65_12125) trmFO 2386692..2387999 (-) 1308 WP_063335351.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=875840 RFN65_RS12105 WP_003220850.1 2382913..2383692(-) (codY) [Bacillus subtilis strain CP35]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=875840 RFN65_RS12105 WP_003220850.1 2382913..2383692(-) (codY) [Bacillus subtilis strain CP35]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467