Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   V8N34_RS00775 Genome accession   NZ_CP149804
Coordinates   120115..120522 (+) Length   135 a.a.
NCBI ID   WP_318825439.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115115..125522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS00750 (V8N34_00750) - 116516..116881 (+) 366 WP_002936568.1 DUF1033 family protein -
  V8N34_RS00755 (V8N34_00755) - 116916..117866 (-) 951 WP_014636751.1 S66 peptidase family protein -
  V8N34_RS00760 (V8N34_00760) comGA 117952..118902 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  V8N34_RS00765 (V8N34_00765) comGB 118814..119851 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  V8N34_RS00770 (V8N34_00770) comGC 119853..120134 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  V8N34_RS00775 (V8N34_00775) comGD/cglD 120115..120522 (+) 408 WP_318825439.1 competence type IV pilus minor pilin ComGD Machinery gene
  V8N34_RS00780 (V8N34_00780) comGE 120494..120787 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  V8N34_RS00785 (V8N34_00785) comGF/cglF 120774..121208 (+) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  V8N34_RS00790 (V8N34_00790) comGG 121186..121596 (+) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  V8N34_RS00795 (V8N34_00795) comGH 121653..122606 (+) 954 WP_044668119.1 class I SAM-dependent methyltransferase Machinery gene
  V8N34_RS00800 (V8N34_00800) - 122656..123843 (+) 1188 WP_002936543.1 acetate kinase -
  V8N34_RS00805 (V8N34_00805) - 124158..124709 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15327.62 Da        Isoelectric Point: 9.3105

>NTDB_id=875450 V8N34_RS00775 WP_318825439.1 120115..120522(+) (comGD/cglD) [Streptococcus suis strain YA]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQ
AVEVPRNIEVLEGKTITLEEDGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=875450 V8N34_RS00775 WP_318825439.1 120115..120522(+) (comGD/cglD) [Streptococcus suis strain YA]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTTCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTACCCAGAAATATAGAAGTGTTGGAAGGGAAGACCATTACACTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD Streptococcus mutans UA140

45.736

95.556

0.437
  comGD Streptococcus mutans UA159

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43