Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   WJM95_RS10645 Genome accession   NZ_CP149798
Coordinates   2417309..2417989 (-) Length   226 a.a.
NCBI ID   WP_339129346.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412309..2422989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS10635 (WJM95_10635) - 2414348..2415286 (+) 939 WP_339129345.1 hypothetical protein -
  WJM95_RS10640 (WJM95_10640) clpX 2415862..2417148 (-) 1287 WP_151471405.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  WJM95_RS10645 (WJM95_10645) clpP 2417309..2417989 (-) 681 WP_339129346.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WJM95_RS10650 (WJM95_10650) clpP 2418107..2418712 (-) 606 WP_037618823.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WJM95_RS10655 (WJM95_10655) tig 2419178..2420557 (-) 1380 WP_339129347.1 trigger factor -
  WJM95_RS10670 (WJM95_10670) - 2421303..2421497 (-) 195 WP_037618829.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24937.39 Da        Isoelectric Point: 4.6288

>NTDB_id=875302 WJM95_RS10645 WP_339129346.1 2417309..2417989(-) (clpP) [Streptomyces sp. f51]
MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRGQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=875302 WJM95_RS10645 WP_339129346.1 2417309..2417989(-) (clpP) [Streptomyces sp. f51]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGAACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGTCGCGGACAGGTCTCGGAC
CTCGAGATCGCCGCGAACGAGATCCTCCGCATGCGCGGTCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCACTGGCCTACGGCCTGATCGACCAGA
TCATTTCCACGCGGAAGATGAACAACTCCGCGGTGGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385