Detailed information NTG0874519

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: RDV54_RS08035
• Genome accession: NZ_CP133471
• Coordinates: 1689370..1689831 (+)
• Length: 153 a.a.
• NCBI ID: WP_000250509.1
• Uniprot ID: -
• Organism: Streptococcus mitis strain LMG 14557
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1684370..1694831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV54_RS08000 (RDV54_08000)	-	1684866..1685924 (+)	1059	WP_000649460.1	zinc-dependent alcohol dehydrogenase family protein	-
RDV54_RS08005 (RDV54_08005)	-	1686074..1686439 (+)	366	WP_000286405.1	DUF1033 family protein	-
RDV54_RS08010 (RDV54_08010)	comGA/cglA/cilD	1686515..1687456 (+)	942	WP_000249545.1	competence type IV pilus ATPase ComGA	Machinery gene
RDV54_RS08015 (RDV54_08015)	comGB/cglB	1687404..1688420 (+)	1017	WP_004238896.1	competence type IV pilus assembly protein ComGB	Machinery gene
RDV54_RS08020 (RDV54_08020)	comGC/cglC	1688422..1688745 (+)	324	WP_000738641.1	comG operon protein ComGC	Machinery gene
RDV54_RS08025 (RDV54_08025)	comGD/cglD	1688708..1689142 (+)	435	WP_029689647.1	competence type IV pilus minor pilin ComGD	Machinery gene
RDV54_RS08030 (RDV54_08030)	comGE/cglE	1689105..1689407 (+)	303	WP_045597458.1	competence type IV pilus minor pilin ComGE	Machinery gene
RDV54_RS08035 (RDV54_08035)	comGF/cglF	1689370..1689831 (+)	462	WP_000250509.1	competence type IV pilus minor pilin ComGF	Machinery gene
RDV54_RS08040 (RDV54_08040)	comGG/cglG	1689809..1690222 (+)	414	WP_000265657.1	competence type IV pilus minor pilin ComGG	Machinery gene
RDV54_RS08045 (RDV54_08045)	-	1690255..1690842 (+)	588	WP_000679792.1	class I SAM-dependent methyltransferase	-
RDV54_RS08050 (RDV54_08050)	comYH	1690903..1691856 (+)	954	WP_000345104.1	class I SAM-dependent methyltransferase	Machinery gene
RDV54_RS08055 (RDV54_08055)	-	1691906..1693096 (+)	1191	WP_000167778.1	acetate kinase	-
RDV54_RS08060 (RDV54_08060)	rnpA	1693246..1693617 (+)	372	WP_000739243.1	ribonuclease P protein component	-
RDV54_RS08065 (RDV54_08065)	-	1693592..1694416 (+)	825	WP_004238894.1	membrane protein insertase YidC	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17825.48 Da
• Isoelectric Point: 8.8053

>NTDB_id=874519 RDV54_RS08035 WP_000250509.1 1689370..1689831(+) (comGF/cglF) [Streptococcus mitis strain LMG 14557]
MVQNSCWLSKSHKIKAFTLLESLIALIVISGSLLLFQAMSQLLISEVRYQQQSEQKEWLLFVDQLEAELDRSQFEKVEGD
RIYMKQDGKEIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEENQVVRFRFQFQKGLEREFIYRVEKAKS

Nucleotide

• Length: 462 bp

>NTDB_id=874519 RDV54_RS08035 WP_000250509.1 1689370..1689831(+) (comGF/cglF) [Streptococcus mitis strain LMG 14557]
ATGGTTCAGAACAGTTGTTGGCTATCAAAGAGCCATAAAATCAAGGCTTTTACCCTGTTAGAATCCCTGATTGCCCTCAT
TGTCATCAGTGGAAGTTTACTCCTCTTTCAGGCCATGAGTCAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCG
AGCAAAAAGAGTGGCTCTTGTTTGTGGACCAGCTGGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAGGCGAT
CGCATTTATATGAAGCAGGATGGCAAGGAAATTGCGATAGGTAAGTCTAAATCGGACGATTTTCGAAAAACCGATGCCAG
TGGACGAGGCTATCAGCCTATGGTTTATGGTCTCAAATCCGCACAGATTACAGAGGAAAATCAAGTGGTTCGTTTTCGTT
TCCAGTTTCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGCAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (45-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus mitis NCTC 12261	100	100	1
comGF/cglF	Streptococcus mitis SK321	94.771	100	0.948
comGF/cglF	Streptococcus pneumoniae Rx1	89.542	100	0.895
comGF/cglF	Streptococcus pneumoniae D39	89.542	100	0.895
comGF/cglF	Streptococcus pneumoniae R6	89.542	100	0.895
comGF/cglF	Streptococcus pneumoniae TIGR4	89.542	100	0.895