Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   RDV54_RS08050 Genome accession   NZ_CP133471
Coordinates   1690903..1691856 (+) Length   317 a.a.
NCBI ID   WP_000345104.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1685903..1696856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08005 (RDV54_08005) - 1686074..1686439 (+) 366 WP_000286405.1 DUF1033 family protein -
  RDV54_RS08010 (RDV54_08010) comGA/cglA/cilD 1686515..1687456 (+) 942 WP_000249545.1 competence type IV pilus ATPase ComGA Machinery gene
  RDV54_RS08015 (RDV54_08015) comGB/cglB 1687404..1688420 (+) 1017 WP_004238896.1 competence type IV pilus assembly protein ComGB Machinery gene
  RDV54_RS08020 (RDV54_08020) comGC/cglC 1688422..1688745 (+) 324 WP_000738641.1 comG operon protein ComGC Machinery gene
  RDV54_RS08025 (RDV54_08025) comGD/cglD 1688708..1689142 (+) 435 WP_029689647.1 competence type IV pilus minor pilin ComGD Machinery gene
  RDV54_RS08030 (RDV54_08030) comGE/cglE 1689105..1689407 (+) 303 WP_045597458.1 competence type IV pilus minor pilin ComGE Machinery gene
  RDV54_RS08035 (RDV54_08035) comGF/cglF 1689370..1689831 (+) 462 WP_000250509.1 competence type IV pilus minor pilin ComGF Machinery gene
  RDV54_RS08040 (RDV54_08040) comGG/cglG 1689809..1690222 (+) 414 WP_000265657.1 competence type IV pilus minor pilin ComGG Machinery gene
  RDV54_RS08045 (RDV54_08045) - 1690255..1690842 (+) 588 WP_000679792.1 class I SAM-dependent methyltransferase -
  RDV54_RS08050 (RDV54_08050) comYH 1690903..1691856 (+) 954 WP_000345104.1 class I SAM-dependent methyltransferase Machinery gene
  RDV54_RS08055 (RDV54_08055) - 1691906..1693096 (+) 1191 WP_000167778.1 acetate kinase -
  RDV54_RS08060 (RDV54_08060) rnpA 1693246..1693617 (+) 372 WP_000739243.1 ribonuclease P protein component -
  RDV54_RS08065 (RDV54_08065) - 1693592..1694416 (+) 825 WP_004238894.1 membrane protein insertase YidC -
  RDV54_RS08070 (RDV54_08070) jag 1694434..1695423 (+) 990 WP_000260003.1 RNA-binding cell elongation regulator Jag/EloR -
  RDV54_RS08075 (RDV54_08075) - 1695474..1696097 (+) 624 WP_000932648.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35637.87 Da        Isoelectric Point: 4.2748

>NTDB_id=874521 RDV54_RS08050 WP_000345104.1 1690903..1691856(+) (comYH) [Streptococcus mitis strain LMG 14557]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVAARHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEANLVAMISLPENLFANAKQSKTIFILQKKSEIPVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=874521 RDV54_RS08050 WP_000345104.1 1690903..1691856(+) (comYH) [Streptococcus mitis strain LMG 14557]
ATGGATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
TTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTTTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCAGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTGGGCGCTACTTTCTTGACTTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTAGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTGATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCAGCGCGCCATCAAGTAGCCTCTAGTCAAGAACATACCTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAATCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTATTGAAAGGGTGGTTGAAAGAAGAGGCAAATCTAGTTGCCATGATCAGTCTCCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCCAAGACGATTTTTATCTTACAAAAGAAAAGTGAAATACCAGTAGAACCCTTTGTTTATCCACTTGCTA
GCCTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

55.272

98.738

0.546
  comYH Streptococcus mutans UA159

54.952

98.738

0.543