Detailed information NTG0874517

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: RDV54_RS08025
• Genome accession: NZ_CP133471
• Coordinates: 1688708..1689142 (+)
• Length: 144 a.a.
• NCBI ID: WP_029689647.1
• Uniprot ID: -
• Organism: Streptococcus mitis strain LMG 14557
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1683708..1694142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV54_RS08000 (RDV54_08000)	-	1684866..1685924 (+)	1059	WP_000649460.1	zinc-dependent alcohol dehydrogenase family protein	-
RDV54_RS08005 (RDV54_08005)	-	1686074..1686439 (+)	366	WP_000286405.1	DUF1033 family protein	-
RDV54_RS08010 (RDV54_08010)	comGA/cglA/cilD	1686515..1687456 (+)	942	WP_000249545.1	competence type IV pilus ATPase ComGA	Machinery gene
RDV54_RS08015 (RDV54_08015)	comGB/cglB	1687404..1688420 (+)	1017	WP_004238896.1	competence type IV pilus assembly protein ComGB	Machinery gene
RDV54_RS08020 (RDV54_08020)	comGC/cglC	1688422..1688745 (+)	324	WP_000738641.1	comG operon protein ComGC	Machinery gene
RDV54_RS08025 (RDV54_08025)	comGD/cglD	1688708..1689142 (+)	435	WP_029689647.1	competence type IV pilus minor pilin ComGD	Machinery gene
RDV54_RS08030 (RDV54_08030)	comGE/cglE	1689105..1689407 (+)	303	WP_045597458.1	competence type IV pilus minor pilin ComGE	Machinery gene
RDV54_RS08035 (RDV54_08035)	comGF/cglF	1689370..1689831 (+)	462	WP_000250509.1	competence type IV pilus minor pilin ComGF	Machinery gene
RDV54_RS08040 (RDV54_08040)	comGG/cglG	1689809..1690222 (+)	414	WP_000265657.1	competence type IV pilus minor pilin ComGG	Machinery gene
RDV54_RS08045 (RDV54_08045)	-	1690255..1690842 (+)	588	WP_000679792.1	class I SAM-dependent methyltransferase	-
RDV54_RS08050 (RDV54_08050)	comYH	1690903..1691856 (+)	954	WP_000345104.1	class I SAM-dependent methyltransferase	Machinery gene
RDV54_RS08055 (RDV54_08055)	-	1691906..1693096 (+)	1191	WP_000167778.1	acetate kinase	-
RDV54_RS08060 (RDV54_08060)	rnpA	1693246..1693617 (+)	372	WP_000739243.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 15771.28 Da
• Isoelectric Point: 10.3971

>NTDB_id=874517 RDV54_RS08025 WP_029689647.1 1688708..1689142(+) (comGD/cglD) [Streptococcus mitis strain LMG 14557]
MLNKIPVKPLQIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGKT
ISNGSQKLTVPKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKD

Nucleotide

• Length: 435 bp

>NTDB_id=874517 RDV54_RS08025 WP_029689647.1 1688708..1689142(+) (comGD/cglD) [Streptococcus mitis strain LMG 14557]
ATGCTAAACAAAATACCAGTCAAACCGTTGCAGATTAAGGCCTTTACCATGCTTGAAAGTCTCTTGGTTTTGGGACTTGT
GAGTATCCTTGCCTTGGGCTTGTCTGGCTCTGTCCAGTCCACTTTTGCGGCGGTAGAGGAGCAGATTTTCTTTATGGAGT
TTGAGGAACTTTATCGGGAAACCCAAAAGCGCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAACTTAGATGGGAAGACA
ATCAGTAATGGCAGTCAAAAGTTGACAGTTCCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGC
TGGGGGCAATTCGTCCCTAGCTAAGGTTGAATTTCAGACCAGTAAAGGAGCGATTCGTTATCAATTATATCTAGGAAATG
GAAAAATTAAACGCATTAAGGAAACAAAAGATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus mitis NCTC 12261	100	100	1
comGD/cglD	Streptococcus pneumoniae Rx1	96.992	92.361	0.896
comGD/cglD	Streptococcus pneumoniae D39	96.992	92.361	0.896
comGD/cglD	Streptococcus pneumoniae R6	96.992	92.361	0.896
comGD/cglD	Streptococcus mitis SK321	96.241	92.361	0.889
comGD/cglD	Streptococcus pneumoniae TIGR4	96.241	92.361	0.889
comYD	Streptococcus gordonii str. Challis substr. CH1	55.97	93.056	0.521
comYD	Streptococcus mutans UA140	49.612	89.583	0.444
comYD	Streptococcus mutans UA159	49.612	89.583	0.444