Detailed information NTG0874400

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RDV50_RS09055
• Genome accession: NZ_CP133462
• Coordinates: 1894202..1895332 (-)
• Length: 376 a.a.
• NCBI ID: WP_070630538.1
• Uniprot ID: -
• Organism: Neisseria subflava strain LMG 5313
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1889202..1900332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV50_RS09035 (RDV50_09035)	mutM	1889865..1890692 (+)	828	WP_137041614.1	DNA-formamidopyrimidine glycosylase	-
RDV50_RS09040 (RDV50_09040)	-	1890757..1891542 (+)	786	WP_003685330.1	1-acylglycerol-3-phosphate O-acyltransferase	-
RDV50_RS09045 (RDV50_09045)	-	1891731..1892468 (+)	738	WP_137040954.1	redoxin family protein	-
RDV50_RS09050 (RDV50_09050)	-	1892722..1894128 (+)	1407	WP_003685068.1	dihydrolipoyl dehydrogenase	-
RDV50_RS09055 (RDV50_09055)	pilU	1894202..1895332 (-)	1131	WP_070630538.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RDV50_RS09060 (RDV50_09060)	-	1895536..1896237 (+)	702	WP_137040953.1	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	-
RDV50_RS09065 (RDV50_09065)	lepA	1896370..1898163 (+)	1794	WP_049351467.1	translation elongation factor 4	-
RDV50_RS09070 (RDV50_09070)	lepB	1898163..1899182 (+)	1020	WP_137040952.1	signal peptidase I	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42373.43 Da
• Isoelectric Point: 5.6513

>NTDB_id=874400 RDV50_RS09055 WP_070630538.1 1894202..1895332(-) (pilU) [Neisseria subflava strain LMG 5313]
MFDENTPGAKEELFAWLHHMNTYKGSDLFITTNFPPAMKVDGKITRLSDEPLSAEKCMEIAFSIMSSKQIEEFSSTNECN
FAISLPDTSRFRVNAMVQRGATALVFRSITSNIPKFETLNLPPILKDIALRKRGLIIFVGGTGSGKSTSLASLIDYRNEN
SFDHIITIEDPIEFIHQHKNCIITQREIGVDTENWPIALKNTLRQAPDVILIGEIRDRETMDYAISFAETGHLCMATLHA
NNTNQALDRIINFFPEERRTQLLTDLSLNLQAFISQRLIPRESGRGRVAAVEVLLNSPIIADLIQKGEVHNIKEMMKKST
GMGMITFDQALYDLYENGDISYKDAIKNADSPHDLRLDIQLRSRRAQNAGPDLELI

Nucleotide

• Length: 1131 bp

>NTDB_id=874400 RDV50_RS09055 WP_070630538.1 1894202..1895332(-) (pilU) [Neisseria subflava strain LMG 5313]
ATGTTTGACGAAAATACTCCGGGTGCAAAAGAAGAATTGTTCGCTTGGCTACACCATATGAACACATACAAAGGCTCCGA
CCTTTTCATTACCACCAATTTCCCGCCGGCCATGAAAGTGGACGGCAAAATTACGCGACTGAGTGATGAGCCGTTGAGTG
CTGAAAAATGTATGGAAATCGCTTTTTCGATTATGTCTTCCAAACAAATCGAAGAATTTTCTTCCACCAACGAATGCAAC
TTCGCCATCAGCCTGCCCGATACCAGTCGCTTCCGTGTCAATGCCATGGTTCAACGCGGTGCAACAGCTTTAGTGTTCCG
CTCCATTACCAGCAATATCCCGAAATTTGAAACGCTCAATCTGCCCCCTATTCTGAAAGACATCGCCCTCAGAAAACGCG
GCCTGATTATTTTTGTCGGTGGTACAGGTTCGGGCAAGTCCACTTCTCTCGCCTCCCTTATCGACTATCGAAACGAAAAC
AGCTTCGACCACATTATCACCATCGAAGACCCGATTGAGTTTATCCACCAACACAAAAACTGCATCATCACCCAACGAGA
AATCGGCGTAGATACCGAAAATTGGCCGATTGCGCTGAAAAACACCCTGCGCCAAGCACCGGATGTTATCTTGATTGGCG
AAATCCGCGACCGCGAGACCATGGACTACGCTATTTCCTTCGCGGAAACCGGCCATTTGTGTATGGCGACACTACATGCC
AACAATACCAACCAAGCACTCGACCGCATCATCAACTTCTTCCCCGAAGAGCGCCGTACCCAGTTGCTGACAGACTTGTC
GCTCAACCTGCAAGCCTTTATTTCACAAAGACTGATTCCCCGTGAAAGCGGACGGGGTCGTGTGGCGGCGGTCGAAGTTT
TGCTCAATTCGCCGATTATTGCCGACTTGATTCAAAAAGGCGAAGTCCACAACATCAAAGAAATGATGAAAAAATCAACC
GGCATGGGCATGATCACTTTTGACCAAGCCTTGTATGATTTGTATGAAAACGGCGATATCAGCTATAAAGACGCTATTAA
AAATGCCGACTCCCCCCATGACTTGCGCCTAGACATTCAATTACGAAGCCGTCGTGCGCAAAATGCCGGTCCGGATTTAG
AATTGATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (44-258)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.227	93.617	0.564
pilU	Acinetobacter baylyi ADP1	58.213	92.287	0.537
pilU	Vibrio cholerae strain A1552	52.925	95.479	0.505
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.03	87.766	0.378
pilT	Acinetobacter nosocomialis M2	41.768	87.234	0.364
pilT	Acinetobacter baumannii D1279779	41.768	87.234	0.364
pilT	Acinetobacter baumannii strain A118	41.768	87.234	0.364
pilT	Acinetobacter baylyi ADP1	41.337	87.5	0.362