Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RDV50_RS04130 Genome accession   NZ_CP133462
Coordinates   846263..848395 (-) Length   710 a.a.
NCBI ID   WP_137041557.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 841263..853395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS04105 (RDV50_04105) - 841653..842219 (+) 567 WP_070633057.1 NADPH-dependent FMN reductase -
  RDV50_RS04110 (RDV50_04110) - 842365..843042 (+) 678 WP_070460434.1 response regulator -
  RDV50_RS04115 (RDV50_04115) - 843072..844385 (+) 1314 WP_137041560.1 ATP-binding protein -
  RDV50_RS04120 (RDV50_04120) aroB 844516..845595 (-) 1080 WP_137041559.1 3-dehydroquinate synthase -
  RDV50_RS04125 (RDV50_04125) - 845618..846139 (-) 522 WP_137041558.1 shikimate kinase -
  RDV50_RS04130 (RDV50_04130) pilQ 846263..848395 (-) 2133 WP_137041557.1 type IV pilus secretin PilQ Machinery gene
  RDV50_RS04135 (RDV50_04135) pilP 848416..848958 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  RDV50_RS04140 (RDV50_04140) - 848974..849645 (-) 672 WP_003684514.1 type 4a pilus biogenesis protein PilO -
  RDV50_RS04145 (RDV50_04145) pilN 849645..850268 (-) 624 WP_049328903.1 PilN domain-containing protein Machinery gene
  RDV50_RS04150 (RDV50_04150) pilM 850273..851364 (-) 1092 WP_167480340.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78045.29 Da        Isoelectric Point: 9.7231

>NTDB_id=874382 RDV50_RS04130 WP_137041557.1 846263..848395(-) (pilQ) [Neisseria subflava strain LMG 5313]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERAATPSTARAAQTYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESSGLNHNANKSFKGRKISLDFQDVEVRTILQILAKESGMNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVDEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGAIGR
TAWGSNWSNAQTNYNTNASFNRGDIGSRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLMTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=874382 RDV50_RS04130 WP_137041557.1 846263..848395(-) (pilQ) [Neisseria subflava strain LMG 5313]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATTAACGTTTCTACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGATGTCACCACACCTC
ATGGTTTTGTAACATCTACGCCGGCGCGTATCGCATTGGATTTTGCCAACACCAATATCCGTTTGCCTCAGCCTGTTTTG
GAATATGCCGACCCATTGCTGAATCAAATTACTGCAGCGCAAAACAATGACCGTGCACGCGTGGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTATTTGTAAACGAATCTACTGATCAAACCAATGCGG
CCGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGCGCTGCTCAGACTTATCAAGCCGTTTCAGCAGCCAATATC
GATTTCCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCCGCCCCTGGTTTCAGCGGACAGCCGGATATTAAACA
GCAGCGCGACCGCGTGGTTGTGACATTGAAAAACCATACTTTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACCCCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTCATTATCCGCAATAATAATGCGAAT
TGGGACATCAATACCAAAGCTTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCTGCCAATACCGAATCCAGCGG
CTTAAACCACAATGCGAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGCATGAATATTGTTGCCAGCGATACCGTCAAAGGCACTATGACTTTGTCCCTGAAA
GATGTACCTTGGGATCAGGCTTTAGACTTGGTTATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAACATTATCAA
TATTGCACCTCGCGATGAATTGTTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGATGAATTCCGCAAAATTCTGCGTTTGGAAGAATACGACAGC
AATAATTCCAACACCCGCAACACTCTGTTGAGCAACCGAGGCAGCGCCTTAATCGATCCGGCCACCAATACGCTGATCGT
AACCGACAACCGCGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGACGTTCCAACCCGTCAAGTGATGGTGG
AAGCGCGTATTGTGGAAGCTGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCGATCGGCCGT
ACGGCATGGGGCAGCAACTGGAGCAATGCACAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGCGACATAGGCTC
CCGCACATGGACTTTGGATCCGAACGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGGGCGTTCT
CGTCCGGCGCATTGGGTTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATTATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTAGATTCTCTGATGACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAGGAAGAAAGCACCAATGCGGTGAACAAAGT
ACCTGTTTTGGGCGATATCCCTGTTGTCGGCAATCTGTTCAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATTATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(545-702)

AMIN domain (AMIN)

(38-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Secretin and TonB N terminus short domain (STN)

(304-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

61.161

100

0.668
  pilQ Neisseria meningitidis MC58

60.536

100

0.668
  pilQ Neisseria gonorrhoeae strain FA1090

64.043

100

0.665