Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RDV50_RS04145 Genome accession   NZ_CP133462
Coordinates   849645..850268 (-) Length   207 a.a.
NCBI ID   WP_049328903.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844645..855268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS04125 (RDV50_04125) - 845618..846139 (-) 522 WP_137041558.1 shikimate kinase -
  RDV50_RS04130 (RDV50_04130) pilQ 846263..848395 (-) 2133 WP_137041557.1 type IV pilus secretin PilQ Machinery gene
  RDV50_RS04135 (RDV50_04135) pilP 848416..848958 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  RDV50_RS04140 (RDV50_04140) - 848974..849645 (-) 672 WP_003684514.1 type 4a pilus biogenesis protein PilO -
  RDV50_RS04145 (RDV50_04145) pilN 849645..850268 (-) 624 WP_049328903.1 PilN domain-containing protein Machinery gene
  RDV50_RS04150 (RDV50_04150) pilM 850273..851364 (-) 1092 WP_167480340.1 type IV pilus assembly protein PilM -
  RDV50_RS04155 (RDV50_04155) - 851518..853914 (+) 2397 WP_137041555.1 penicillin-binding protein 1A -
  RDV50_RS04160 (RDV50_04160) - 853980..854816 (+) 837 WP_137041554.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23028.21 Da        Isoelectric Point: 4.7171

>NTDB_id=874384 RDV50_RS04145 WP_049328903.1 849645..850268(-) (pilN) [Neisseria subflava strain LMG 5313]
MIELTRINLLPYREEIKQRKQQQFKVLMLGAFAVGLGLAAATYLGIDSAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNALTPDNTYLTALEAESPTSYKISGHAVSDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSSEIAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=874384 RDV50_RS04145 WP_049328903.1 849645..850268(-) (pilN) [Neisseria subflava strain LMG 5313]
ATGATCGAATTAACCAGAATCAACCTTCTTCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAGTATT
GATGCTTGGCGCTTTTGCAGTGGGTTTGGGCTTGGCAGCCGCTACCTATCTCGGTATTGATAGCGCCATCAGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATCGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCCAAGAAGCTGAAAGTGGAAGAGTTGCAGGAAAAACGCTATCAAGCAGCTTATATCCTTGATTC
TTTGAATGCGCTTACGCCCGATAATACTTATTTGACTGCGTTGGAAGCAGAAAGCCCGACCAGCTATAAAATTAGCGGCC
ATGCCGTCAGCGACAATAAAATCGCCGTTATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATCAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTGAATACGCCGGCTCCTGCACC
GACTGCACAAAGCAGCAGTGAAATAGCCGAACCTGTGGCAGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

60.452

85.507

0.517