Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RDV50_RS04135 Genome accession   NZ_CP133462
Coordinates   848416..848958 (-) Length   180 a.a.
NCBI ID   WP_003684527.1    Uniprot ID   A0A4D7WUN7
Organism   Neisseria subflava strain LMG 5313     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 843416..853958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS04120 (RDV50_04120) aroB 844516..845595 (-) 1080 WP_137041559.1 3-dehydroquinate synthase -
  RDV50_RS04125 (RDV50_04125) - 845618..846139 (-) 522 WP_137041558.1 shikimate kinase -
  RDV50_RS04130 (RDV50_04130) pilQ 846263..848395 (-) 2133 WP_137041557.1 type IV pilus secretin PilQ Machinery gene
  RDV50_RS04135 (RDV50_04135) pilP 848416..848958 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  RDV50_RS04140 (RDV50_04140) - 848974..849645 (-) 672 WP_003684514.1 type 4a pilus biogenesis protein PilO -
  RDV50_RS04145 (RDV50_04145) pilN 849645..850268 (-) 624 WP_049328903.1 PilN domain-containing protein Machinery gene
  RDV50_RS04150 (RDV50_04150) pilM 850273..851364 (-) 1092 WP_167480340.1 type IV pilus assembly protein PilM -
  RDV50_RS04155 (RDV50_04155) - 851518..853914 (+) 2397 WP_137041555.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20019.51 Da        Isoelectric Point: 5.3039

>NTDB_id=874383 RDV50_RS04135 WP_003684527.1 848416..848958(-) (pilP) [Neisseria subflava strain LMG 5313]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYSPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=874383 RDV50_RS04135 WP_003684527.1 848416..848958(-) (pilP) [Neisseria subflava strain LMG 5313]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCTAAGCCATATAGCC
CGCCGAACTTTAAAGGCATGAATGCGTTTGATTCACGCCGTTTGGACACTGCTCCTAAAGGCGGCAATGCGCCGGATGTG
AACCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAACATGGCCTTTGTCGGAACGCTTCAAAGCGGCGGCAAAGT
TTCCGGATTTATCAAGGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTATATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACTGAAGATAAAATTATCTTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCGGATTCTTCCAATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WUN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60.588

94.444

0.572