Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   RDV50_RS04780 Genome accession   NZ_CP133462
Coordinates   980708..981202 (-) Length   164 a.a.
NCBI ID   WP_167480347.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975708..986202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS04760 (RDV50_04760) - 976283..976561 (+) 279 WP_137041466.1 helix-turn-helix transcriptional regulator -
  RDV50_RS04765 (RDV50_04765) xth 976729..977499 (+) 771 WP_137041465.1 exodeoxyribonuclease III -
  RDV50_RS04770 (RDV50_04770) - 977748..978383 (-) 636 WP_039405269.1 HEPN domain-containing protein -
  RDV50_RS04775 (RDV50_04775) uvrB 978429..980453 (-) 2025 WP_137041464.1 excinuclease ABC subunit UvrB -
  RDV50_RS04780 (RDV50_04780) comP 980708..981202 (-) 495 WP_167480347.1 type IV pilin protein Machinery gene
  RDV50_RS04785 (RDV50_04785) comE 981386..981673 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV50_RS04790 (RDV50_04790) - 981953..982759 (+) 807 WP_137041463.1 integrase core domain-containing protein -
  RDV50_RS04795 (RDV50_04795) - 983114..984520 (+) 1407 WP_137041462.1 tetratricopeptide repeat protein -
  RDV50_RS04800 (RDV50_04800) gltS 984738..985952 (+) 1215 WP_137041460.1 sodium/glutamate symporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18187.18 Da        Isoelectric Point: 9.9431

>NTDB_id=874385 RDV50_RS04780 WP_167480347.1 980708..981202(-) (comP) [Neisseria subflava strain LMG 5313]
MYLNVFDGKRNRATVQRGYSLIQLLVVILVASILATVAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCEKMKGKGSCMDGEEIFRGNDAECR
PFTG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=874385 RDV50_RS04780 WP_167480347.1 980708..981202(-) (comP) [Neisseria subflava strain LMG 5313]
ATGTACTTAAATGTATTTGATGGAAAACGGAATAGGGCAACTGTGCAGAGGGGCTACTCTTTGATACAGCTGTTGGTGGT
GATATTGGTGGCTTCGATATTGGCGACGGTGGCATTTACGGCCTACCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAGCTGCCGGTGAAGGAGGCGGGTGGTTTCTGCATCAGGATGAGCGGTCAGGCTAAGGGGATCTTGGAGGG
GAAGTTTACCCTGAAGGCGGTGGCGTTGGACAGGGAGGCGGAGCCGAGGGTGTTGCGCTTGAACGAGTCGCTGACGGCGG
TGGTGTGCGAGAAGATGAAGGGGAAGGGCAGCTGTATGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTCGG
CCTTTTACGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

92.073

100

0.921
  comP Neisseria meningitidis 8013

49.664

90.854

0.451
  comP Neisseria gonorrhoeae MS11

49.66

89.634

0.445