Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   RDV50_RS04785 Genome accession   NZ_CP133462
Coordinates   981386..981673 (-) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 976386..986673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS04765 (RDV50_04765) xth 976729..977499 (+) 771 WP_137041465.1 exodeoxyribonuclease III -
  RDV50_RS04770 (RDV50_04770) - 977748..978383 (-) 636 WP_039405269.1 HEPN domain-containing protein -
  RDV50_RS04775 (RDV50_04775) uvrB 978429..980453 (-) 2025 WP_137041464.1 excinuclease ABC subunit UvrB -
  RDV50_RS04780 (RDV50_04780) comP 980708..981202 (-) 495 WP_167480347.1 type IV pilin protein Machinery gene
  RDV50_RS04785 (RDV50_04785) comE 981386..981673 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV50_RS04790 (RDV50_04790) - 981953..982759 (+) 807 WP_137041463.1 integrase core domain-containing protein -
  RDV50_RS04795 (RDV50_04795) - 983114..984520 (+) 1407 WP_137041462.1 tetratricopeptide repeat protein -
  RDV50_RS04800 (RDV50_04800) gltS 984738..985952 (+) 1215 WP_137041460.1 sodium/glutamate symporter -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=874386 RDV50_RS04785 WP_036472233.1 981386..981673(-) (comE) [Neisseria subflava strain LMG 5313]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=874386 RDV50_RS04785 WP_036472233.1 981386..981673(-) (comE) [Neisseria subflava strain LMG 5313]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACCGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4