Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RDV50_RS02985 Genome accession   NZ_CP133462
Coordinates   620292..621788 (+) Length   498 a.a.
NCBI ID   WP_137040263.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 615292..626788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS02970 (RDV50_02970) - 617411..618286 (-) 876 WP_137040267.1 lysophospholipid acyltransferase family protein -
  RDV50_RS02975 (RDV50_02975) metK 618679..619848 (+) 1170 WP_137040265.1 methionine adenosyltransferase -
  RDV50_RS02980 (RDV50_02980) - 619958..620278 (+) 321 WP_049332041.1 accessory factor UbiK family protein -
  RDV50_RS02985 (RDV50_02985) comM 620292..621788 (+) 1497 WP_137040263.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV50_RS02990 (RDV50_02990) - 621943..622953 (+) 1011 WP_137040261.1 SPOR domain-containing protein -
  RDV50_RS02995 (RDV50_02995) dsbA1 622965..623606 (+) 642 WP_137040259.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RDV50_RS03000 (RDV50_03000) - 623651..624475 (+) 825 WP_137040257.1 undecaprenyl-diphosphate phosphatase -
  RDV50_RS03005 (RDV50_03005) comP 624552..624965 (-) 414 WP_070747509.1 type IV pilin protein Machinery gene
  RDV50_RS03010 (RDV50_03010) comE 625230..625517 (-) 288 WP_137040255.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53817.87 Da        Isoelectric Point: 7.5535

>NTDB_id=874376 RDV50_RS02985 WP_137040263.1 620292..621788(+) (comM) [Neisseria subflava strain LMG 5313]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLAQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIEPLTQTECKLTQRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNYQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSATVLERVTAARKIQYNRQGKVNAELSVGELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=874376 RDV50_RS02985 WP_137040263.1 620292..621788(+) (comM) [Neisseria subflava strain LMG 5313]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCTTTAAGCGGTATGAACGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGATTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGTGTGCGTGCCGCCATTA
TCCAAAGCGGTTTCGACTTTCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCAAAAGAATCCGGCCGT
TTCGATTTGCCGATTGCTTTAGGCATTCTTGCCGCATCGGGACAAATCAACCCTGAAAAGCTCGCCCAATATGAGTTTGC
CGGAGAATTGGCACTGTCCGGCCTGCTGCGTCCCGTACGCGGTGCGCTGGCTATGGCATGGCAGGGAATGCAGGCCGGCC
GTTCGTTCGTCTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTTATGCGCGGTATCGCGGTTTATGGTGCGCGCTCTTTA
GGCGAAGTGGCCGCACATTTAAACGGTATCGAACCGTTGACACAAACTGAATGCAAGCTGACGCAAAGGCCGTCAGAACA
AAGTAAAATACCTGATTTAGCCGATGTTAAAGGCCAGCATACCGCCCGCCTTGCTTTGGAAATCGCAGCGGCAGGCGGAC
ACAGCCTGCTGATGATGGGTCCGCCGGGTACAGGCAAATCCATGCTTTCGCAACGTTTGCCCGGCATCCTTCCTCCTTTG
ACCGAAGACGAATTGGTCGAAGTATGGGCATTGCGTTCGCTCCTGCCCAACTATCAACAGCAACTCGACAGCAACCGTCC
TTTCCGCAGCCCTCATCACAGCGCCAGCTCAGCTGCCATGGTAGGCGGCGGTTCAGACCCACGTCCGGGCGAAATTTCAT
TGGCACACCACGGAGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTAGAAGTATTGCGCGAACCTTTG
GAAAACGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCAGTTTATCCGGCAAAGTTCCAACTTGTCGCCGCCATGAA
CCCCTGCCCTTGCGGCTATCTTGGACATCCGTCCAAACCTTGCCGCTGCACGCCTGAAAGCGTTGCCCGCTACCGCAACA
AAATTTCAGGGCCATTGCTCGACCGTATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCTGCCGAGCTGATGCAACAA
GAAGCAGGCGAATCCAGTGCCACCGTATTGGAACGCGTTACCGCCGCACGAAAAATCCAATACAACAGACAGGGCAAAGT
CAATGCAGAACTGAGTGTCGGCGAGCTCGATGGCAAAGCCCGCATCCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TTGAAAAACTGTCCCTTTCCGCACGAAGTTTTCACCGCATCATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGCGAC
GAAGAAGTCAGCAAAACCCATGTGATGAAAGCCATCGGCTTCCGTCGCGCCCTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

100

0.532
  comM Vibrio campbellii strain DS40M4

52

100

0.522
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.402

100

0.498
  comM Legionella pneumophila str. Paris

46.875

100

0.482
  comM Legionella pneumophila strain ERS1305867

46.875

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.446