Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   RDV50_RS02995 Genome accession   NZ_CP133462
Coordinates   622965..623606 (+) Length   213 a.a.
NCBI ID   WP_137040259.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617965..628606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS02975 (RDV50_02975) metK 618679..619848 (+) 1170 WP_137040265.1 methionine adenosyltransferase -
  RDV50_RS02980 (RDV50_02980) - 619958..620278 (+) 321 WP_049332041.1 accessory factor UbiK family protein -
  RDV50_RS02985 (RDV50_02985) comM 620292..621788 (+) 1497 WP_137040263.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV50_RS02990 (RDV50_02990) - 621943..622953 (+) 1011 WP_137040261.1 SPOR domain-containing protein -
  RDV50_RS02995 (RDV50_02995) dsbA1 622965..623606 (+) 642 WP_137040259.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RDV50_RS03000 (RDV50_03000) - 623651..624475 (+) 825 WP_137040257.1 undecaprenyl-diphosphate phosphatase -
  RDV50_RS03005 (RDV50_03005) comP 624552..624965 (-) 414 WP_070747509.1 type IV pilin protein Machinery gene
  RDV50_RS03010 (RDV50_03010) comE 625230..625517 (-) 288 WP_137040255.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23613.39 Da        Isoelectric Point: 9.7607

>NTDB_id=874377 RDV50_RS02995 WP_137040259.1 622965..623606(+) (dsbA1) [Neisseria subflava strain LMG 5313]
MKQSIKQTIAALGLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTSFDSKKLLQTYNSPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGTDWKAGMKTIDELIVKVLREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=874377 RDV50_RS02995 WP_137040259.1 622965..623606(+) (dsbA1) [Neisseria subflava strain LMG 5313]
ATGAAGCAGAGTATAAAACAAACCATTGCCGCACTCGGCCTGAGCCTGCTCAGTCTGAGTGCTCAGGCTGCTACCGAGGG
CGTGGACTATACTGTCCTCAGTCGCCCTATCCCGCAGCAACAAGCCGGCAAAATTGAAGTGCTTGAGTTTTTCGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGTAAAACCTTTGCTAAAGATGTTTCCTTACGGACG
GAGCACGTCGTTTGGATGCCTGAAATGTTGGGTTTGGCCAAGGTTGCCGCAGCCGTTAATCTTTCAGGTTTGAAATATCA
AGCTAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCCGATACCAATGTATTCCGATCATGGGTGG
GTAAACAGACGAGTTTTGACAGTAAAAAACTGCTTCAAACCTACAACAGTCCTGCTGCCGCATCAGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TACCGATTGGAAAGCCGGCATGAAAACCATAGACGAGCTCATCGTCAAAGTCCTCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

58.824

87.793

0.516
  dsbA2 Neisseria meningitidis MC58

57.979

88.263

0.512