Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   RDV50_RS03010 Genome accession   NZ_CP133462
Coordinates   625230..625517 (-) Length   95 a.a.
NCBI ID   WP_137040255.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 620230..630517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS02985 (RDV50_02985) comM 620292..621788 (+) 1497 WP_137040263.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV50_RS02990 (RDV50_02990) - 621943..622953 (+) 1011 WP_137040261.1 SPOR domain-containing protein -
  RDV50_RS02995 (RDV50_02995) dsbA1 622965..623606 (+) 642 WP_137040259.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RDV50_RS03000 (RDV50_03000) - 623651..624475 (+) 825 WP_137040257.1 undecaprenyl-diphosphate phosphatase -
  RDV50_RS03005 (RDV50_03005) comP 624552..624965 (-) 414 WP_070747509.1 type IV pilin protein Machinery gene
  RDV50_RS03010 (RDV50_03010) comE 625230..625517 (-) 288 WP_137040255.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9793.45 Da        Isoelectric Point: 10.4923

>NTDB_id=874379 RDV50_RS03010 WP_137040255.1 625230..625517(-) (comE) [Neisseria subflava strain LMG 5313]
MKKFLFGAFAAVCTAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=874379 RDV50_RS03010 WP_137040255.1 625230..625517(-) (comE) [Neisseria subflava strain LMG 5313]
ATGAAGAAATTTTTATTTGGTGCGTTTGCCGCCGTCTGTACGGCGTTCTCTTTGGCTGCCGTGAACATCAATACCGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

68.605

90.526

0.621
  comE Neisseria gonorrhoeae MS11

68.605

90.526

0.621
  comE Neisseria gonorrhoeae MS11

68.605

90.526

0.621
  comE Neisseria gonorrhoeae MS11

68.605

90.526

0.621
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474