Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   RDV50_RS03005 Genome accession   NZ_CP133462
Coordinates   624552..624965 (-) Length   137 a.a.
NCBI ID   WP_070747509.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619552..629965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS02980 (RDV50_02980) - 619958..620278 (+) 321 WP_049332041.1 accessory factor UbiK family protein -
  RDV50_RS02985 (RDV50_02985) comM 620292..621788 (+) 1497 WP_137040263.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV50_RS02990 (RDV50_02990) - 621943..622953 (+) 1011 WP_137040261.1 SPOR domain-containing protein -
  RDV50_RS02995 (RDV50_02995) dsbA1 622965..623606 (+) 642 WP_137040259.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RDV50_RS03000 (RDV50_03000) - 623651..624475 (+) 825 WP_137040257.1 undecaprenyl-diphosphate phosphatase -
  RDV50_RS03005 (RDV50_03005) comP 624552..624965 (-) 414 WP_070747509.1 type IV pilin protein Machinery gene
  RDV50_RS03010 (RDV50_03010) comE 625230..625517 (-) 288 WP_137040255.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15110.58 Da        Isoelectric Point: 9.2783

>NTDB_id=874378 RDV50_RS03005 WP_070747509.1 624552..624965(-) (comP) [Neisseria subflava strain LMG 5313]
MLLVSILATVAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMSGQAKGILEG
KFTLKAVALDREAEPRVLRLNESLTAVVCEKMKGKGSCMDGEEIFRGNDAECRPFTG

Nucleotide


Download         Length: 414 bp        

>NTDB_id=874378 RDV50_RS03005 WP_070747509.1 624552..624965(-) (comP) [Neisseria subflava strain LMG 5313]
ATGTTGTTGGTTTCGATATTGGCGACGGTGGCATTTACGGCCTACCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGGC
GCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAGCTGCCGGTGAAGGAGGCGGGTGGTTTCTGCATCAGGATGAGCGGTCAGGCTAAGGGGATCTTGGAGGGG
AAGTTTACTCTGAAGGCGGTGGCGTTGGACAGGGAGGCGGAGCCGAGGGTATTACGCTTGAACGAGTCGCTGACGGCGGT
GGTGTGCGAGAAGATGAAGGGGAAGGGCAGCTGTATGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTCGGC
CTTTTACGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

96.35

100

0.964
  comP Neisseria meningitidis 8013

50.37

98.54

0.496
  comP Neisseria gonorrhoeae MS11

50.376

97.08

0.489