NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	WHX55_RS21170	Genome accession	NZ_CP148752
Coordinates	4676537..4677172 (-)	Length	211 a.a.
NCBI ID	WP_151214474.1	Uniprot ID	-
Organism	Pseudomonas fluorescens strain AB1
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4671537..4682172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHX55_RS21155 (WHX55_21135)	-	4672073..4672345 (-)	273	WP_002552737.1	HU family DNA-binding protein	-
WHX55_RS21160 (WHX55_21140)	lon	4672495..4674891 (-)	2397	WP_008048849.1	endopeptidase La	-
WHX55_RS21165 (WHX55_21145)	clpX	4675141..4676424 (-)	1284	WP_007982210.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
WHX55_RS21170 (WHX55_21150)	clpP	4676537..4677172 (-)	636	WP_151214474.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
WHX55_RS21175 (WHX55_21155)	tig	4677266..4678576 (-)	1311	WP_057714092.1	trigger factor	-
WHX55_RS21200 (WHX55_21180)	folD	4679717..4680571 (+)	855	WP_008001570.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
WHX55_RS21205 (WHX55_21185)	pbpG	4680807..4681745 (+)	939	WP_353741236.1	D-alanyl-D-alanine endopeptidase	-
WHX55_RS21210 (WHX55_21190)	-	4681804..4682019 (-)	216	WP_150753039.1	hypothetical protein	-

Sequence

Protein

Download Length: 211 a.a. Molecular weight: 23481.85 Da Isoelectric Point: 5.3139

                                >NTDB_id=873510 WHX55_RS21170 WP_151214474.1 4676537..4677172(-) (clpP) [Pseudomonas fluorescens strain AB1]

MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVATTCIGQACSMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL

FIRERLNTLMAQHSGRTLEEIERDTNRDNFMSAEAAREYGLIDEVISQRPA

Nucleotide

Download Length: 636 bp

                                >NTDB_id=873510 WHX55_RS21170 WP_151214474.1 4676537..4677172(-) (clpP) [Pseudomonas fluorescens strain AB1]

ATGTTCCGTAATTCGTATATTCAGCAGAACTCTGATATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTGTCGAGCAGTC

CGCTCGTGGCGAGCGCGCCTACGACATCTACTCGCGTCTCCTCAAGGAGCGGGTGATCTTTCTGGTTGGTCCGGTAGAGG

ACTACATGGCCAACCTGATCTGTGCGCAACTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTCTACATC

AACTCCCCGGGCGGTTCGGTGACGGCGGGCATGTCGATCTACGACACCATGCAGTTCATCAAGCCCAACGTGGCGACCAC

CTGTATCGGTCAGGCGTGCAGCATGGGTGCGTTCCTGCTGACGGCCGGTGCAAAAGGCAAGCGCTACTGCCTGCCGAACT

CGCGTGTGATGATTCACCAGCCACTGGGCGGTTTCCAGGGCCAGGCGTCGGATATCGAAATCCATGCCAAGGAAATCCTC

TTCATTCGCGAGCGTCTCAACACGCTGATGGCCCAGCACAGCGGGCGCACTCTCGAAGAAATCGAGCGCGATACCAATCG

CGACAATTTCATGAGTGCAGAAGCCGCGCGTGAGTACGGGTTGATCGATGAAGTGATCAGCCAGCGCCCTGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.895	90.047	0.611
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.158	90.047	0.569
clpP	Lactococcus lactis subsp. cremoris KW2	56.771	90.995	0.517
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.208	90.995	0.502
clpP	Streptococcus pneumoniae Rx1	52.88	90.521	0.479
clpP	Streptococcus pneumoniae D39	52.88	90.521	0.479
clpP	Streptococcus pneumoniae R6	52.88	90.521	0.479
clpP	Streptococcus pneumoniae TIGR4	52.88	90.521	0.479
clpP	Streptococcus pyogenes JRS4	53.158	90.047	0.479
clpP	Streptococcus pyogenes MGAS315	53.158	90.047	0.479
clpP	Streptococcus mutans UA159	53.158	90.047	0.479
clpP	Streptococcus thermophilus LMG 18311	52.356	90.521	0.474
clpP	Streptococcus thermophilus LMD-9	52.356	90.521	0.474

Detailed information NTG0873510