Detailed information NTG0873509

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: WHX55_RS21165
• Genome accession: NZ_CP148752
• Coordinates: 4675141..4676424 (-)
• Length: 427 a.a.
• NCBI ID: WP_007982210.1
• Uniprot ID: A0A2S3VN99
• Organism: Pseudomonas fluorescens strain AB1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4670141..4681424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHX55_RS21155 (WHX55_21135)	-	4672073..4672345 (-)	273	WP_002552737.1	HU family DNA-binding protein	-
WHX55_RS21160 (WHX55_21140)	lon	4672495..4674891 (-)	2397	WP_008048849.1	endopeptidase La	-
WHX55_RS21165 (WHX55_21145)	clpX	4675141..4676424 (-)	1284	WP_007982210.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
WHX55_RS21170 (WHX55_21150)	clpP	4676537..4677172 (-)	636	WP_151214474.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
WHX55_RS21175 (WHX55_21155)	tig	4677266..4678576 (-)	1311	WP_057714092.1	trigger factor	-
WHX55_RS21200 (WHX55_21180)	folD	4679717..4680571 (+)	855	WP_008001570.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46985.59 Da
• Isoelectric Point: 4.8431

>NTDB_id=873509 WHX55_RS21165 WP_007982210.1 4675141..4676424(-) (clpX) [Pseudomonas fluorescens strain AB1]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPTAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=873509 WHX55_RS21165 WP_007982210.1 4675141..4676424(-) (clpX) [Pseudomonas fluorescens strain AB1]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCATGAAGTACG
CAAGTTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAACGACATCATCCGCGAGGAGGTGC
AGGAAGCACAGGCCGAAAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGATCAGTATGTGATT
GGTCAGGAGCGTGCGAAAAAGGTTCTGGCCGTAGCGGTGTACAACCACTACAAGCGCCTGAACCAGCGTGACAAAAAGAA
TGACGACGTCGAACTCGGCAAGAGCAACATTTTGCTGATCGGCCCGACAGGCTCGGGTAAGACCCTGCTTGCCGAAACAC
TGGCCCGTTTGCTGAACGTTCCGTTCACCATCGCCGACGCAACCACCCTCACCGAGGCGGGTTACGTGGGTGAAGATGTC
GAGAACATCATTCAGAAGCTGCTGCAGAAATGCGATTACGACGTGGAAAAAGCCCAGATGGGCATTGTCTACATCGATGA
AATCGACAAGATTTCGCGCAAGTCTGACAACCCGTCGATTACCCGGGACGTTTCCGGTGAAGGCGTGCAGCAGGCCCTGC
TCAAGTTGATCGAAGGCACGGTCGCTTCCGTTCCACCACAAGGTGGTCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTC
GACACCCGTAACATCCTGTTCATCTGCGGTGGTGCGTTCTCTGGTCTTGAGAAGGTCATTCAAAACCGTTCCACCAAGGG
TGGCATCGGTTTCAACGCAGAAGTGCGCAGCAAGGAAGAAGGCAAGAAAGTCGGTGAATCCCTGCGTGAAGTCGAGCCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCTGAATTCGTCGGTCGTCTGCCGGTACTTGCCACGCTGGACGAGCTTGACGAG
GCTGCGTTGATGCAGATCCTCACCGAGCCGAAAAATGCCCTGACCAAGCAGTATGCCAAGCTGTTCGAGATGGAAGGCGT
GGATCTGGAATTCCGCAGCGACGCTCTGAAATCGGTCGCCAAGCGTGCCCTGGAGCGTAAAACCGGTGCCCGTGGCCTGC
GTTCGATTCTCGAAGGTGTATTGCTCGACACTATGTATGAAATCCCCTCGCAATCGGAGGTGAGCAAAGTAGTGATCGAT
GAAAGCGTGATAGAAGGCAAGTCCAAGCCACTGTATATCTATGAAAACAGTGAGCCGACCGCCAAGGCCGCGCCAGACGC
TTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

3D structure

• AlphaFold DB: A0A2S3VN99

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.837	95.082	0.578
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.436	94.614	0.534