Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RCF35_RS13720 Genome accession   NZ_CP133277
Coordinates   2699717..2700967 (+) Length   416 a.a.
NCBI ID   WP_032874945.1    Uniprot ID   -
Organism   Bacillus velezensis strain NBNZ-0060     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2694717..2705967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS13690 (RCF35_13690) yfmH 2694799..2696085 (+) 1287 WP_032874941.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RCF35_RS13695 (RCF35_13695) ymfI 2696145..2696873 (+) 729 WP_032874943.1 elongation factor P 5-aminopentanone reductase -
  RCF35_RS13700 (RCF35_13700) - 2696949..2697206 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  RCF35_RS13705 (RCF35_13705) - 2697334..2698125 (+) 792 WP_003154149.1 YmfK family protein -
  RCF35_RS13710 (RCF35_13710) - 2698144..2699043 (+) 900 WP_014417801.1 RodZ domain-containing protein -
  RCF35_RS13715 (RCF35_13715) pgsA 2699118..2699699 (+) 582 WP_007611521.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCF35_RS13720 (RCF35_13720) cinA 2699717..2700967 (+) 1251 WP_032874945.1 competence/damage-inducible protein A Machinery gene
  RCF35_RS13725 (RCF35_13725) recA 2701138..2702181 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  RCF35_RS13730 (RCF35_13730) - 2702349..2703530 (+) 1182 WP_032874947.1 serine hydrolase -
  RCF35_RS13735 (RCF35_13735) rny 2703823..2705382 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45083.40 Da        Isoelectric Point: 5.2580

>NTDB_id=873219 RCF35_RS13720 WP_032874945.1 2699717..2700967(+) (cinA) [Bacillus velezensis strain NBNZ-0060]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=873219 RCF35_RS13720 WP_032874945.1 2699717..2700967(+) (cinA) [Bacillus velezensis strain NBNZ-0060]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTAGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCTGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGTTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGTGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.129

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.651

100

0.469
  cinA Streptococcus pneumoniae R6

46.651

100

0.469
  cinA Streptococcus pneumoniae D39

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385