Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   RCF35_RS00410 Genome accession   NZ_CP133277
Coordinates   73329..75629 (-) Length   766 a.a.
NCBI ID   WP_032876801.1    Uniprot ID   -
Organism   Bacillus velezensis strain NBNZ-0060     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 68329..80629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS00370 (RCF35_00370) - 68789..69220 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  RCF35_RS00375 (RCF35_00375) - 69220..69561 (+) 342 WP_032876807.1 Na(+)/H(+) antiporter subunit C -
  RCF35_RS00380 (RCF35_00380) - 69554..71035 (+) 1482 WP_032876804.1 Na+/H+ antiporter subunit D -
  RCF35_RS00385 (RCF35_00385) - 71041..71517 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  RCF35_RS00390 (RCF35_00390) - 71517..71801 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  RCF35_RS00395 (RCF35_00395) mnhG 71785..72159 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  RCF35_RS00400 (RCF35_00400) - 72199..72582 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  RCF35_RS00405 (RCF35_00405) comA 72604..73248 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RCF35_RS00410 (RCF35_00410) comP 73329..75629 (-) 2301 WP_032876801.1 histidine kinase Regulator
  RCF35_RS00415 (RCF35_00415) comX 75643..75816 (-) 174 WP_012118314.1 competence pheromone ComX -
  RCF35_RS00420 (RCF35_00420) - 75785..76645 (-) 861 WP_142925231.1 polyprenyl synthetase family protein -
  RCF35_RS00425 (RCF35_00425) degQ 76853..76993 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RCF35_RS00430 (RCF35_00430) - 77459..77800 (+) 342 WP_032876795.1 hypothetical protein -
  RCF35_RS00435 (RCF35_00435) - 77807..79030 (-) 1224 WP_032876792.1 EAL and HDOD domain-containing protein -
  RCF35_RS00440 (RCF35_00440) - 79160..80626 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 766 a.a.        Molecular weight: 88316.54 Da        Isoelectric Point: 7.1786

>NTDB_id=873170 RCF35_RS00410 WP_032876801.1 73329..75629(-) (comP) [Bacillus velezensis strain NBNZ-0060]
MKLSKNTYSILLILLSLSYIFYLTYINVNNLFVGATANVNNKNQIEITKVSDYTMAYYAGVKKGDIVIKINQNKSVEPKD
LKQNTLKNVRSMTVERSGEIVDLKNLSLLSEDNLFVYLIPVIFFFVCLSCIILILKINKEQDSVSAFILIIFLLTTGIAY
VSAGGSSKGDIISRYVNVITLISVPVNYLLFIYQYIKEFGYKIFNGKVFVALYTVPVINIILEFFRHCFERGVVGKVNLV
SISLLYLIALFFITVGLIKYKKTEQANILKTFLLINIFAFSPFVFLYVAPYIIFNDYYVSSFLVAPFLLLIPFSLVYQFM
TNKIYEIDFIIGRLKYYSLLAVTPTLLIITIYDLVQDPNSEFYTFKLTLLTYIIMLAVFYSKEILDFRFRLKRFSEKHNY
QDSIFKFTQIIKGASSLKQVFTELESTLLEVLMVSKVCVLEVEGDLNVRYFFNDNEKKLWEPYSHQLAETTSEIGKIVQV
DKGFLMKIGERGTKSYIVLCLSFMNTPKLTWDEISWLKTLSFYTSITMENVLKIEELMNHLEDLKKQETNPVWLKKLMFT
IEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCQLEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYDLGL
VKAVSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDGVGC
NQEEGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKADIEMEL

Nucleotide


Download         Length: 2301 bp        

>NTDB_id=873170 RCF35_RS00410 WP_032876801.1 73329..75629(-) (comP) [Bacillus velezensis strain NBNZ-0060]
ATGAAGTTATCTAAAAATACGTATTCCATTTTATTAATTTTACTCAGCTTGTCTTATATTTTCTATTTAACTTATATAAA
TGTAAATAATTTATTTGTAGGAGCCACCGCAAATGTTAATAACAAGAATCAAATAGAGATTACCAAAGTATCAGATTACA
CAATGGCTTATTATGCTGGTGTTAAAAAAGGTGACATTGTAATTAAAATTAATCAGAATAAGAGCGTTGAACCAAAAGAT
TTAAAACAAAATACATTGAAAAACGTAAGATCTATGACAGTTGAAAGATCTGGTGAAATAGTTGATCTCAAAAATTTAAG
TTTATTAAGTGAAGACAACTTATTTGTTTATTTAATACCTGTTATTTTTTTCTTTGTATGCCTTAGTTGTATTATCCTTA
TTTTAAAAATTAATAAGGAGCAAGATTCAGTTTCAGCTTTTATATTGATCATCTTTTTACTCACTACTGGTATAGCATAT
GTAAGTGCGGGAGGTTCATCAAAAGGAGATATAATAAGCCGATACGTAAATGTCATAACTTTAATATCCGTACCGGTAAA
TTATCTCTTGTTTATTTACCAATATATCAAAGAATTTGGATACAAGATTTTTAACGGGAAAGTTTTTGTTGCTTTATATA
CAGTCCCTGTTATTAATATAATACTAGAGTTTTTTAGGCATTGCTTTGAAAGAGGAGTAGTTGGGAAAGTTAATTTAGTA
TCAATATCTCTCCTTTATTTAATAGCTCTATTTTTCATTACTGTAGGTTTAATAAAGTACAAAAAAACAGAGCAAGCAAA
TATTCTTAAGACTTTTCTTTTAATTAATATTTTTGCTTTCTCACCATTTGTATTCTTGTATGTGGCACCCTACATCATTT
TTAATGACTATTATGTTTCTTCTTTTTTAGTTGCGCCTTTTCTTTTATTAATTCCTTTTTCTTTAGTTTATCAATTTATG
ACTAATAAAATCTATGAAATTGATTTTATTATTGGGCGGTTGAAATATTATAGTCTTTTAGCTGTCACTCCTACTTTACT
TATTATTACAATTTATGATCTTGTACAAGATCCAAACTCAGAGTTTTATACGTTTAAACTAACTTTGCTGACATATATTA
TTATGTTGGCTGTGTTTTATTCAAAAGAGATCTTAGATTTTCGTTTCCGTTTAAAGCGTTTTTCTGAAAAACATAATTAT
CAGGACAGCATATTCAAGTTTACTCAAATAATTAAAGGAGCTTCATCCTTAAAGCAAGTATTCACTGAACTTGAATCTAC
TCTACTTGAAGTTTTGATGGTTAGTAAAGTATGTGTTTTAGAAGTAGAAGGAGACTTAAATGTAAGGTATTTTTTTAATG
ATAATGAGAAAAAATTATGGGAGCCGTATTCTCATCAATTAGCTGAAACGACAAGCGAAATTGGCAAAATAGTTCAAGTG
GATAAAGGGTTTTTAATGAAAATAGGGGAACGGGGCACTAAATCATACATTGTACTGTGTTTATCATTTATGAATACTCC
GAAACTAACTTGGGATGAGATTTCTTGGTTAAAAACCTTATCATTCTACACCAGTATTACGATGGAGAATGTGCTTAAAA
TCGAAGAACTTATGAATCATCTCGAAGATTTAAAGAAACAAGAGACAAACCCGGTCTGGCTCAAAAAGCTGATGTTTACG
ATCGAGGAAAAGCAGCGTTCGGATTTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGACTTGATTTCTTTGAAGCGCCA
GTGTGAGCTGTTTCTGGCCGATTTTAAGAAAGAGGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATCAGATGAATG
AGCAGATGTCGGATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTGCGTCCTCAGCTGCTGTATGATTTGGGTCTG
GTCAAGGCGGTATCCAAGCTTGCCGCACAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTTTAC
GGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATCATTCAGGAATTTCTTTCGAACGCCATGAAGCATTCAC
AGGCGAATGAGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGGTGTCGGCTGC
AATCAGGAAGAAGGCGGCGGGCAGTCGATGAGCATGGGGCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCTTGACGGACG
GATGAAAATCGACACAAGTGAAGGAAACGGTTTTAAAGCGGATATTGAAATGGAATTGTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(566-635)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

56.471

99.869

0.564