Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RCF35_RS00405 Genome accession   NZ_CP133277
Coordinates   72604..73248 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain NBNZ-0060     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 67604..78248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS00370 (RCF35_00370) - 68789..69220 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  RCF35_RS00375 (RCF35_00375) - 69220..69561 (+) 342 WP_032876807.1 Na(+)/H(+) antiporter subunit C -
  RCF35_RS00380 (RCF35_00380) - 69554..71035 (+) 1482 WP_032876804.1 Na+/H+ antiporter subunit D -
  RCF35_RS00385 (RCF35_00385) - 71041..71517 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  RCF35_RS00390 (RCF35_00390) - 71517..71801 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  RCF35_RS00395 (RCF35_00395) mnhG 71785..72159 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  RCF35_RS00400 (RCF35_00400) - 72199..72582 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  RCF35_RS00405 (RCF35_00405) comA 72604..73248 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RCF35_RS00410 (RCF35_00410) comP 73329..75629 (-) 2301 WP_032876801.1 histidine kinase Regulator
  RCF35_RS00415 (RCF35_00415) comX 75643..75816 (-) 174 WP_012118314.1 competence pheromone ComX -
  RCF35_RS00420 (RCF35_00420) - 75785..76645 (-) 861 WP_142925231.1 polyprenyl synthetase family protein -
  RCF35_RS00425 (RCF35_00425) degQ 76853..76993 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RCF35_RS00430 (RCF35_00430) - 77459..77800 (+) 342 WP_032876795.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=873169 RCF35_RS00405 WP_003152052.1 72604..73248(-) (comA) [Bacillus velezensis strain NBNZ-0060]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=873169 RCF35_RS00405 WP_003152052.1 72604..73248(-) (comA) [Bacillus velezensis strain NBNZ-0060]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGTCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864