Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RA178_RS19850 Genome accession   NZ_CP132914
Coordinates   4483769..4485037 (+) Length   422 a.a.
NCBI ID   WP_113940789.1    Uniprot ID   A0AA50Q632
Organism   Shewanella oncorhynchi strain Z-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4478769..4490037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA178_RS19830 (RA178_19825) ampD 4479048..4479611 (-) 564 WP_306683487.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RA178_RS19835 (RA178_19830) nadC 4479869..4480750 (+) 882 WP_306683489.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RA178_RS19840 (RA178_19835) - 4481500..4481934 (+) 435 WP_306683490.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RA178_RS19845 (RA178_19840) pilB 4482006..4483715 (+) 1710 WP_306683491.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RA178_RS19850 (RA178_19845) pilC 4483769..4485037 (+) 1269 WP_113940789.1 type II secretion system F family protein Machinery gene
  RA178_RS19855 (RA178_19850) pilD 4485070..4485996 (+) 927 WP_306683493.1 A24 family peptidase Machinery gene
  RA178_RS19860 (RA178_19855) coaE 4486158..4486775 (+) 618 WP_263223082.1 dephospho-CoA kinase -
  RA178_RS19865 (RA178_19860) zapD 4486768..4487502 (+) 735 WP_173247868.1 cell division protein ZapD -
  RA178_RS19870 (RA178_19865) yacG 4487576..4487785 (+) 210 WP_219251915.1 DNA gyrase inhibitor YacG -
  RA178_RS19875 (RA178_19870) mutT 4487864..4488256 (+) 393 WP_131523409.1 8-oxo-dGTP diphosphatase MutT -
  RA178_RS19880 (RA178_19875) - 4488750..4489286 (+) 537 WP_306683498.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46101.22 Da        Isoelectric Point: 10.1188

>NTDB_id=870710 RA178_RS19850 WP_113940789.1 4483769..4485037(+) (pilC) [Shewanella oncorhynchi strain Z-P2]
MATATTVRKSRGKKNEQKSQPKIYTFEWKGVNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSPLFKLGEANIT
PMDIAMMTRQVATMLAAGVPLVTTFELLGRGHEKAKMRELLGTILTDIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVALLVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILNIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKIVS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=870710 RA178_RS19850 WP_113940789.1 4483769..4485037(+) (pilC) [Shewanella oncorhynchi strain Z-P2]
ATGGCTACGGCAACAACAGTAAGAAAGTCTCGCGGCAAAAAAAACGAGCAAAAAAGCCAGCCCAAAATCTATACCTTCGA
ATGGAAAGGCGTAAATCGCGACGGCAAAAAAACGGCAGGAGAGCTTAGAGGTGCAACCGCAGCCGAAATCCGTAGTCAGC
TTAAATCCCAAGGAGTAAACCCTAAGAGCGTTCGTAAGCAGTCCTCTCCGCTATTTAAGTTAGGTGAAGCCAATATCACC
CCTATGGATATAGCAATGATGACCCGTCAAGTCGCGACTATGTTGGCGGCAGGCGTTCCTTTGGTAACGACATTTGAACT
ACTCGGCCGTGGCCATGAAAAAGCTAAAATGCGGGAATTACTGGGTACTATTTTAACCGACATTCAATCGGGTATTCCCT
TATCCGATGCCATGCGCCCCCATAGACGTTACTTCGACGAACTTTATGTAGACTTAGTCGCCGCAGGTGAGCACTCAGGT
TCACTCGATTTGGTTTTCGATCGCGTCGCAACCTACAGAGAAAAAACGGAAGCGCTCAAATCAAAAATTAAGAAAGCCAT
GTTCTATCCTGCAGCGGTCGTCATAGTCGCGCTTTTAGTCACGACATTGTTATTACTCTTTGTCGTACCTCAATTCGAGG
AAATTTTTAAGGGCTTTGGTGCAGAACTACCCGCCTTTACGCAACTGGTACTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTACATCTTTTTAGCCGCTATTGTTGGCGGCGTATTTTTGTTTGTACGAGCACACCGAAACTCGCAAATGGTGCGAGA
TAGAGTCGATGAAGCCGTGCTTAAAATCCCAGCCATTGGACCGATTTTACACAAAGGTGCCATGGCTCGTTTCGCCCGCA
CCTTAGCTACCACATTTGCAGCAGGTGTGCCGTTAATTGATGGCTTAGAATCCGCCGCTGGCGCATCGGGTAATGCCGTT
TATCGCAAAGCCATATTGAATATTCGCCAAGAGGTCATGGCGGGAATGCAGATGAATGTCGCAATGCAAACCACAGGGCT
TTTTCCCGATATGTTAGTGCAGATGGTGATGATAGGCGAAGAATCCGGCTCGCTGGATAACATGCTCAACAAAGTCTCAA
CCATCTATGAAATGCAGGTCGACGATGCGGTTGATGGTTTATCAAGCCTAATTGAACCTATTATGATGGTAGTCATAGGT
ACTGTGGTCGGCGGGTTAATTGTCGCTATGTATCTTCCTATCTTCCAAATGGGTAAAATCGTCAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

93.839

0.512
  pilC Legionella pneumophila strain ERS1305867

49.752

95.735

0.476
  pilC Acinetobacter baumannii D1279779

48.744

94.313

0.46
  pilC Acinetobacter baylyi ADP1

48.111

94.076

0.453
  pilC Vibrio cholerae strain A1552

47.462

93.365

0.443
  pilC Vibrio campbellii strain DS40M4

44.776

95.261

0.427
  pilG Neisseria meningitidis 44/76-A

41.687

95.498

0.398
  pilG Neisseria gonorrhoeae MS11

41.687

95.498

0.398