Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU05_RS07400 Genome accession   NZ_CP148363
Coordinates   1558485..1559114 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain Z1323HEC0355     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553485..1564114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU05_RS07380 (WHU05_07380) ycbZ 1553874..1555634 (-) 1761 WP_021559822.1 Lon protease family protein -
  WHU05_RS07385 (WHU05_07385) matP 1555820..1556272 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  WHU05_RS07390 (WHU05_07390) ompA 1556349..1557401 (-) 1053 WP_001346420.1 porin OmpA -
  WHU05_RS07395 (WHU05_07395) sulA 1557757..1558266 (-) 510 WP_001357107.1 SOS-induced cell division inhibitor SulA -
  WHU05_RS07400 (WHU05_07400) sxy/tfoX 1558485..1559114 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU05_RS07405 (WHU05_07405) yccS 1559077..1561239 (-) 2163 WP_001357106.1 YccS family putative transporter -
  WHU05_RS07410 (WHU05_07410) yccF 1561249..1561695 (-) 447 WP_001261236.1 YccF domain-containing protein -
  WHU05_RS07415 (WHU05_07415) helD 1561818..1563872 (+) 2055 WP_001357105.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=870710 WHU05_RS07400 WP_000839151.1 1558485..1559114(+) (sxy/tfoX) [Escherichia coli strain Z1323HEC0355]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=870710 WHU05_RS07400 WP_000839151.1 1558485..1559114(+) (sxy/tfoX) [Escherichia coli strain Z1323HEC0355]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995