Detailed information NTG0870711

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA178_RS19855
• Genome accession: NZ_CP132914
• Coordinates: 4485070..4485996 (+)
• Length: 308 a.a.
• NCBI ID: WP_306683493.1
• Uniprot ID: A0AA50Q319
• Organism: Shewanella oncorhynchi strain Z-P2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4480070..4490996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA178_RS19840 (RA178_19835)	-	4481500..4481934 (+)	435	WP_306683490.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
RA178_RS19845 (RA178_19840)	pilB	4482006..4483715 (+)	1710	WP_306683491.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RA178_RS19850 (RA178_19845)	pilC	4483769..4485037 (+)	1269	WP_113940789.1	type II secretion system F family protein	Machinery gene
RA178_RS19855 (RA178_19850)	pilD	4485070..4485996 (+)	927	WP_306683493.1	A24 family peptidase	Machinery gene
RA178_RS19860 (RA178_19855)	coaE	4486158..4486775 (+)	618	WP_263223082.1	dephospho-CoA kinase	-
RA178_RS19865 (RA178_19860)	zapD	4486768..4487502 (+)	735	WP_173247868.1	cell division protein ZapD	-
RA178_RS19870 (RA178_19865)	yacG	4487576..4487785 (+)	210	WP_219251915.1	DNA gyrase inhibitor YacG	-
RA178_RS19875 (RA178_19870)	mutT	4487864..4488256 (+)	393	WP_131523409.1	8-oxo-dGTP diphosphatase MutT	-
RA178_RS19880 (RA178_19875)	-	4488750..4489286 (+)	537	WP_306683498.1	thioredoxin family protein	-
RA178_RS19885 (RA178_19880)	-	4489353..4490279 (-)	927	WP_306683499.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34373.72 Da
• Isoelectric Point: 7.0814

>NTDB_id=870711 RA178_RS19855 WP_306683493.1 4485070..4485996(+) (pilD) [Shewanella oncorhynchi strain Z-P2]
MSEFISLLGHSFNQSPWLFVTLSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHAEIVTQIGIDKLNTPIDSF
PEKYNLVVPGSACPKCKTSIKPWHNLPVFGWLMLKGKCAACHAPISARYPIIEFITGLLVATLAWHFGPSWQFVFASILT
FVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAVIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITMIVSKRLKQGNSIPFGPYIAAAGWIALLFGQQIVDWYLETL

Nucleotide

• Length: 927 bp

>NTDB_id=870711 RA178_RS19855 WP_306683493.1 4485070..4485996(+) (pilD) [Shewanella oncorhynchi strain Z-P2]
ATGTCAGAATTTATCTCTCTTTTAGGCCACTCTTTTAATCAGAGTCCTTGGCTCTTTGTTACACTAAGCTTTATTTTTGC
CGCCACCATAGGCAGTTTTTTAAACGTAGTGATCCACAGATTTCCTGTGATGATGAAACGGGAATGGCAGCAAGAATGCA
ATCAGTATTTGCAGGAATACCACGCTGAGATAGTCACACAAATCGGTATTGATAAACTCAATACACCTATAGATAGCTTC
CCCGAAAAATATAATCTCGTGGTGCCGGGCTCAGCCTGCCCTAAGTGCAAAACGTCGATTAAACCTTGGCATAATTTACC
TGTATTCGGCTGGTTAATGCTCAAGGGAAAATGCGCCGCCTGTCACGCCCCCATTTCCGCCCGCTACCCAATAATTGAAT
TCATCACAGGGCTACTTGTTGCGACTTTAGCGTGGCACTTTGGTCCAAGCTGGCAATTTGTCTTTGCGAGCATACTGACA
TTTGTACTTGTCGCACTTACTGGTATCGATCTTGATGAGATGCTGCTGCCAGATCAAATGACGTTACCGTTACTTTGGCT
CGGCTTGATCATCAATCTAAATCATACCTTTGCGAGCCCAACCGATGCCGTTATCGGTGCGGCAGCTGGCTATTTAAGCT
TGTGGTCCATTTTTTGGCTATTTAAGATCCTCACTGGCAAGGAAGGCATGGGCTATGGGGACTTTAAACTGCTCGCCGTT
TTCGGTGCTTGGCTCGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCTTAGTCGGAGCACTGGTCGGCATCAC
TATGATTGTCAGTAAACGCCTCAAGCAAGGTAATTCCATCCCATTTGGGCCTTATATTGCTGCCGCAGGCTGGATAGCCT
TGCTATTTGGACAACAGATTGTTGATTGGTATTTAGAAACTCTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.839	97.078	0.503
pilD	Vibrio campbellii strain DS40M4	50	96.753	0.484
pilD	Acinetobacter baumannii D1279779	48.443	93.831	0.455
pilD	Acinetobacter nosocomialis M2	48.443	93.831	0.455
pilD	Neisseria gonorrhoeae MS11	44.674	94.481	0.422