Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WHU04_RS15085 Genome accession   NZ_CP148357
Coordinates   2925268..2925735 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323HEC0393     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2920268..2930735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU04_RS15040 (WHU04_15010) rplP 2920378..2920788 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  WHU04_RS15045 (WHU04_15015) rpsC 2920801..2921502 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  WHU04_RS15050 (WHU04_15020) rplV 2921520..2921852 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  WHU04_RS15055 (WHU04_15025) rpsS 2921867..2922145 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  WHU04_RS15060 (WHU04_15030) rplB 2922162..2922983 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  WHU04_RS15065 (WHU04_15035) rplW 2923001..2923303 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  WHU04_RS15070 (WHU04_15040) rplD 2923300..2923905 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  WHU04_RS15075 (WHU04_15045) rplC 2923916..2924545 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  WHU04_RS15080 (WHU04_15050) rpsJ 2924578..2924889 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  WHU04_RS15085 (WHU04_15055) pilD 2925268..2925735 (+) 468 WP_000340171.1 A24 family peptidase Machinery gene
  WHU04_RS15090 (WHU04_15060) bfr 2925732..2926208 (-) 477 WP_000675515.1 bacterioferritin -
  WHU04_RS15095 (WHU04_15065) bfd 2926281..2926475 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  WHU04_RS15100 (WHU04_15070) tuf 2926658..2927842 (-) 1185 WP_000031783.1 elongation factor Tu -
  WHU04_RS15105 (WHU04_15075) fusA 2927913..2930027 (-) 2115 WP_000124700.1 elongation factor G -
  WHU04_RS15110 (WHU04_15080) rpsG 2930124..2930594 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=870643 WHU04_RS15085 WP_000340171.1 2925268..2925735(+) (pilD) [Escherichia coli strain Z1323HEC0393]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=870643 WHU04_RS15085 WP_000340171.1 2925268..2925735(+) (pilD) [Escherichia coli strain Z1323HEC0393]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361