Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LACZS2_RS04285 Genome accession   NZ_CP132485
Coordinates   890096..891337 (+) Length   413 a.a.
NCBI ID   WP_070650241.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 885096..896337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACZS2_RS04265 (LACZS2_000852) - 886190..887485 (+) 1296 WP_093997915.1 pitrilysin family protein -
  LACZS2_RS04270 (LACZS2_000853) - 887482..888210 (+) 729 WP_070650244.1 SDR family oxidoreductase -
  LACZS2_RS04275 (LACZS2_000854) - 888294..889232 (+) 939 WP_070650243.1 helix-turn-helix domain-containing protein -
  LACZS2_RS04280 (LACZS2_000855) pgsA 889229..889822 (+) 594 WP_070650242.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LACZS2_RS04285 (LACZS2_000856) cinA 890096..891337 (+) 1242 WP_070650241.1 competence/damage-inducible protein A Machinery gene
  LACZS2_RS04290 (LACZS2_000857) recA 891392..892378 (+) 987 Protein_818 recombinase RecA -
  LACZS2_RS04295 (LACZS2_000858) rny 892917..894488 (+) 1572 WP_010489446.1 ribonuclease Y -
  LACZS2_RS04300 (LACZS2_000859) - 894627..895280 (-) 654 WP_070650240.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44209.66 Da        Isoelectric Point: 6.4340

>NTDB_id=869278 LACZS2_RS04285 WP_070650241.1 890096..891337(+) (cinA) [Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNAQRLADAISLAEKRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNKLQAMYPQGADILVNRVGLAVGAWVEQHQHAYVLLPGPPKEFIPMV
DHELLPRLAKYSGHHEAFVSRVMRFFGVGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGETQADAEAKLEPVI
GAIMEREGRYFYGYGDDNSLAKELVKALVATDKQITAAESLTAGAFQAALGDVPGVSDYFKGGFVTYALATKAAFLNIDA
RELAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARMGQAPVAQVYHFPGGRNDVRKRAV
MTGMMIALKSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=869278 LACZS2_RS04285 WP_070650241.1 890096..891337(+) (cinA) [Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475]
ATGCAAGCAGAAATTATTGCTGTCGGAACTGAAATTCTGATGGGACAGATTACTAATACTAATGGCGCCTATATGGCTAA
ACAGTTGGCCGCTTTAGGCATTGCCAGCTATCATCAACAGGTTGTCGGTGACAATGCGCAGCGCCTGGCTGATGCGATCA
GCTTAGCCGAAAAACGCAGTGACATTGTGATTTTGATCGGTGGTTTAGGACCCACACCAGATGACCTGACGAAACAAACG
TTGGCGGCTCATCTGAATTTGCCGTTGGTTGAAGATGCGGATGCCATGGCAAAACTGGCGGCGCGGGTAAAACAACAGCA
ACGGCCAATGACGCCAAATAATAAGTTACAGGCGATGTATCCGCAAGGTGCTGATATATTGGTTAATCGTGTCGGGCTGG
CAGTCGGTGCCTGGGTCGAACAACACCAACATGCCTATGTACTACTGCCTGGGCCGCCTAAGGAATTTATCCCAATGGTT
GATCATGAGCTATTACCTCGTTTGGCCAAGTATAGCGGCCACCATGAAGCTTTTGTCAGCCGCGTGATGCGCTTCTTTGG
CGTTGGTGAATCACAACTGGTGACGGATTTGGGTGACTTGATTGCCAAGCAAACGAATCCGACATTAGCCACTTACATCA
AGGACCATGAGGTGACCATTCGGGTGACAGCTAGCGGTGAGACCCAAGCAGACGCTGAAGCAAAATTGGAACCGGTGATT
GGCGCCATTATGGAGCGCGAGGGACGTTACTTTTATGGTTATGGTGATGATAATAGCCTCGCTAAAGAGTTGGTCAAGGC
ATTAGTGGCGACCGACAAGCAAATAACGGCAGCAGAGAGCTTGACAGCCGGTGCGTTTCAGGCGGCTTTGGGGGATGTTC
CCGGCGTCTCGGATTATTTCAAAGGCGGCTTTGTGACCTATGCATTAGCCACTAAGGCAGCATTTTTGAATATTGACGCG
CGTGAGTTAGCGGCTCATGGGGTAGTGAGTGAATTTACCGCCAAAGCAATGGCCGAGCATGCCCGTCAGCGGGCTGCGGC
CGATATTGCAGTCAGTTTTACCGGCGTGGCCGGGCCCGACACACTGGAAGGCCAGCCAGCGGGGACAGTTTGGATCGGCT
TAGCGAGGATGGGCCAGGCGCCGGTTGCACAGGTTTATCATTTTCCCGGTGGCCGCAATGATGTGCGCAAACGCGCGGTT
ATGACCGGCATGATGATCGCATTGAAGAGCTTGCGGGATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.831

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.831

100

0.518
  cinA Streptococcus mutans UA159

50.725

100

0.508
  cinA Streptococcus pneumoniae TIGR4

49.881

100

0.508
  cinA Streptococcus pneumoniae Rx1

49.406

100

0.504
  cinA Streptococcus pneumoniae R6

49.406

100

0.504
  cinA Streptococcus pneumoniae D39

49.169

100

0.501
  cinA Bacillus subtilis subsp. subtilis str. 168

45.122

99.274

0.448
  cinA Streptococcus suis isolate S10

41.623

92.494

0.385