Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RAM11_RS11260 Genome accession   NZ_CP132383
Coordinates   2485692..2485994 (-) Length   100 a.a.
NCBI ID   WP_306243769.1    Uniprot ID   -
Organism   Gilliamella apis strain K-MP18     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2480692..2490994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM11_RS11235 (RAM11_11235) - 2481349..2482047 (-) 699 WP_306243761.1 Bax inhibitor-1/YccA family protein -
  RAM11_RS11240 (RAM11_11240) moaE 2482101..2482544 (-) 444 WP_306243763.1 molybdopterin synthase catalytic subunit MoaE -
  RAM11_RS11245 (RAM11_11245) moaD 2482549..2482794 (-) 246 WP_034904250.1 molybdopterin synthase sulfur carrier subunit -
  RAM11_RS11250 (RAM11_11250) moaC 2482799..2483290 (-) 492 WP_306243765.1 cyclic pyranopterin monophosphate synthase MoaC -
  RAM11_RS11255 (RAM11_11255) priA 2483483..2485651 (+) 2169 WP_306243767.1 primosomal protein N' -
  RAM11_RS11260 (RAM11_11260) comEA/comE1 2485692..2485994 (-) 303 WP_306243769.1 ComEA family DNA-binding protein Machinery gene
  RAM11_RS11265 (RAM11_11265) - 2486147..2488015 (-) 1869 WP_306243771.1 SurA N-terminal domain-containing protein -
  RAM11_RS11270 (RAM11_11270) lon 2488165..2490576 (-) 2412 WP_306243773.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11097.98 Da        Isoelectric Point: 6.2882

>NTDB_id=868925 RAM11_RS11260 WP_306243769.1 2485692..2485994(-) (comEA/comE1) [Gilliamella apis strain K-MP18]
MKIFTILCFLFSSIFFPTICFAESKSETTTAVEKQVTQVNINTATAEELTKELVGIGMSKAQKIIEYREKFGPFISIEQL
KEVSGIGQATLDKNIGKITL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=868925 RAM11_RS11260 WP_306243769.1 2485692..2485994(-) (comEA/comE1) [Gilliamella apis strain K-MP18]
ATGAAAATTTTTACAATATTATGTTTTTTATTCTCAAGCATCTTTTTTCCAACTATCTGTTTTGCAGAATCAAAATCAGA
AACTACTACAGCAGTAGAAAAACAAGTTACTCAAGTTAATATCAACACCGCAACAGCTGAAGAATTAACTAAAGAGTTAG
TTGGTATTGGTATGAGTAAAGCTCAGAAGATTATTGAATATCGAGAAAAATTTGGTCCTTTTATTTCTATAGAGCAGTTA
AAAGAGGTTTCAGGTATTGGTCAAGCAACACTTGATAAAAATATAGGAAAAATTACATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.