Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RAM17_RS11740 Genome accession   NZ_CP132381
Coordinates   2554373..2554675 (-) Length   100 a.a.
NCBI ID   WP_110447133.1    Uniprot ID   A0A2V4DZA0
Organism   Gilliamella apis strain ESL0172     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2549373..2559675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM17_RS11715 (RAM17_11720) - 2550034..2550732 (-) 699 WP_110447138.1 Bax inhibitor-1/YccA family protein -
  RAM17_RS11720 (RAM17_11725) moaE 2550786..2551229 (-) 444 WP_110447137.1 molybdopterin synthase catalytic subunit MoaE -
  RAM17_RS11725 (RAM17_11730) moaD 2551234..2551479 (-) 246 WP_110447136.1 molybdopterin synthase sulfur carrier subunit -
  RAM17_RS11730 (RAM17_11735) moaC 2551484..2551975 (-) 492 WP_110447135.1 cyclic pyranopterin monophosphate synthase MoaC -
  RAM17_RS11735 (RAM17_11740) priA 2552164..2554332 (+) 2169 WP_110447134.1 primosomal protein N' -
  RAM17_RS11740 (RAM17_11745) comEA/comE1 2554373..2554675 (-) 303 WP_110447133.1 ComEA family DNA-binding protein Machinery gene
  RAM17_RS11745 (RAM17_11750) - 2554828..2556696 (-) 1869 WP_110447132.1 SurA N-terminal domain-containing protein -
  RAM17_RS11750 (RAM17_11755) lon 2556846..2559257 (-) 2412 WP_110447131.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11067.95 Da        Isoelectric Point: 6.2882

>NTDB_id=868889 RAM17_RS11740 WP_110447133.1 2554373..2554675(-) (comEA/comE1) [Gilliamella apis strain ESL0172]
MKIFTILCFLFSSIFFPTICFAESKSETTTAVEKQVAQVNINTATAEELTKELVGIGMSKAQKIIEYREKFGPFISIEQL
KEVSGIGQATLDKNIGKITL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=868889 RAM17_RS11740 WP_110447133.1 2554373..2554675(-) (comEA/comE1) [Gilliamella apis strain ESL0172]
ATGAAAATTTTTACAATATTATGTTTTTTATTCTCAAGCATCTTTTTTCCAACTATCTGTTTTGCAGAATCAAAATCAGA
AACTACTACAGCGGTAGAAAAACAAGTTGCTCAAGTTAATATTAACACGGCAACAGCTGAAGAATTAACTAAAGAGTTAG
TTGGTATTGGTATGAGTAAAGCTCAGAAGATTATTGAATATCGAGAAAAATTTGGTCCTTTTATTTCTATAGAGCAGTTA
AAAGAGGTTTCAGGTATTGGTCAAGCAACACTTGATAAAAATATAGGAAAAATTACATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V4DZA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.