Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q9451_RS29655 Genome accession   NZ_CP132350
Coordinates   6561023..6562285 (-) Length   420 a.a.
NCBI ID   WP_012274632.1    Uniprot ID   A0AAU6YEE0
Organism   Pseudomonas sp. NY8896     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6556023..6567285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9451_RS29635 (Q9451_29645) - 6557333..6557557 (-) 225 WP_150104963.1 hypothetical protein -
  Q9451_RS29640 (Q9451_29650) - 6557687..6559291 (-) 1605 WP_012274629.1 AAA family ATPase -
  Q9451_RS29645 (Q9451_29655) aroB 6559307..6560404 (-) 1098 WP_041166613.1 3-dehydroquinate synthase -
  Q9451_RS29650 (Q9451_29660) aroK 6560500..6561018 (-) 519 WP_041166614.1 shikimate kinase AroK -
  Q9451_RS29655 (Q9451_29665) pilQ 6561023..6562285 (-) 1263 WP_012274632.1 type IV pilus secretin PilQ family protein Machinery gene
  Q9451_RS29660 (Q9451_29670) - 6562215..6563225 (-) 1011 WP_012274633.1 pilus assembly protein PilP -
  Q9451_RS29665 (Q9451_29675) - 6563222..6563758 (-) 537 WP_012274634.1 PilN domain-containing protein -
  Q9451_RS29670 (Q9451_29680) pilM 6563755..6564636 (-) 882 WP_012274635.1 pilus assembly protein PilM -
  Q9451_RS29675 (Q9451_29685) - 6564815..6567268 (+) 2454 WP_012274636.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45592.23 Da        Isoelectric Point: 4.9812

>NTDB_id=868360 Q9451_RS29655 WP_012274632.1 6561023..6562285(-) (pilQ) [Pseudomonas sp. NY8896]
MKTWMKYLLATLLSVPLASATSYEGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGNVTMRLQDVPWDQALDLVLR
SKGLARRQEGNVLLVAPAADFAAQSAGTRAGQVLEAQLQPLRRELLPIHHAKAADLAELLQSSLVGDGILTGSLSVDERT
NTLVVHMPADRLAELRQLVTQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKELFVDLGVERAGGSIGL
GLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSFREASLSLEVTPQITPDNKV
IMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKS
ELLVFLTPRIMSDQAIAVSR

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=868360 Q9451_RS29655 WP_012274632.1 6561023..6562285(-) (pilQ) [Pseudomonas sp. NY8896]
ATGAAAACGTGGATGAAATATCTGCTGGCAACCCTGCTGTCGGTTCCGCTGGCGTCGGCGACGTCTTATGAGGGTGAGCC
GCTGTCGTTGAACTTTCAGGATGTAGAGGTGCGCGCGGTACTGCAGGTACTGGCGGACTATGCCGGGGTAAACCTGGTAG
CCAGCGATGCGGTGCAAGGCAACGTCACGATGCGCTTGCAGGACGTGCCGTGGGATCAGGCACTGGACCTGGTGTTGCGC
AGCAAGGGCCTGGCTCGGCGCCAGGAGGGTAATGTGCTGTTGGTGGCGCCTGCCGCCGACTTTGCCGCACAGTCAGCCGG
GACCCGTGCGGGGCAAGTGCTGGAAGCGCAGTTGCAACCTTTGCGTCGGGAACTGCTGCCTATCCACCACGCCAAGGCTG
CCGATTTGGCGGAGTTGCTACAGTCGAGCCTGGTGGGTGACGGTATTCTCACGGGTAGCCTGAGTGTCGATGAGCGCACC
AATACCCTGGTGGTGCACATGCCTGCCGACCGCCTGGCCGAATTGCGGCAACTGGTGACGCAGTTGGATGTGCCGGTGCG
CCAGGTAGCGATCGAGGCGCGTATCGTCGAGGCCAACGTCGATTACGAGAAGAGCCTGGGGGTGCGCTGGGGCGGGCCGC
TATACGGCGCGCAACTGCGGCCAGGCAAAGAATTGTTCGTCGATCTCGGCGTCGAGCGTGCCGGCGGCAGTATCGGCCTT
GGGTTATTGCGCGGGGACGTGTTGCTGGACCTTGAGCTCAGCGCCATGGAAAAGAGTGGTAACGGCGAGATCATTTCGCA
GCCCAAGGTGGTCACGGCCGACAAGGAAACGGCGAGGATCCTCAAGGGAACCGAGGTGCCTTACCAGGAAACCAGCCAAA
GCGGTGCGACCTCGGTATCTTTTCGCGAAGCGTCGCTGTCGTTGGAAGTTACCCCGCAGATCACCCCGGACAATAAGGTG
ATCATGACCGTCAGGGTGACCAAGGACGAGCCGGATTACGTCAATGCCTTGAACAACGTACCGCCGATCCGCAAGAACGA
GGTAAATGCCAAGGTTCGTGTGGCTGATGGCGAAACGATCGTGATTGGTGGCGTTTACTCGACTTCGCAAAACAATGTGG
TCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCC
GAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(51-97)

Bacterial type II/III secretion system short domain (Secretin_N)

(125-188)

Bacterial type II and III secretion system protein (Secretin)

(255-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

59.132

100

0.617
  pilQ Acinetobacter baumannii D1279779

41.379

100

0.457
  pilQ Acinetobacter baumannii strain A118

41.379

100

0.457
  comQ Acinetobacter baylyi ADP1

41.907

100

0.45
  pilQ Legionella pneumophila strain ERS1305867

43.675

99.762

0.436
  pilQ Legionella pneumophila strain Lp02

43.675

99.762

0.436
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.745

100

0.421
  pilQ Vibrio cholerae strain A1552

41.745

100

0.421
  pilQ Vibrio campbellii strain DS40M4

40.46

100

0.419