Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RAB70_RS09025 Genome accession   NZ_CP132342
Coordinates   2133008..2134267 (-) Length   419 a.a.
NCBI ID   WP_148828512.1    Uniprot ID   -
Organism   Xanthomonas sontii strain PPL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128008..2139267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB70_RS09000 (RAB70_09000) - 2129016..2129198 (+) 183 WP_148828479.1 hypothetical protein -
  RAB70_RS09005 (RAB70_09005) - 2129382..2130059 (+) 678 WP_010340533.1 response regulator transcription factor -
  RAB70_RS09010 (RAB70_09010) - 2130052..2131386 (+) 1335 WP_148828478.1 HAMP domain-containing sensor histidine kinase -
  RAB70_RS09015 (RAB70_09015) coaE 2131495..2132124 (-) 630 WP_148828477.1 dephospho-CoA kinase -
  RAB70_RS09020 (RAB70_09020) - 2132138..2133001 (-) 864 WP_017910397.1 A24 family peptidase -
  RAB70_RS09025 (RAB70_09025) pilC 2133008..2134267 (-) 1260 WP_148828512.1 type II secretion system F family protein Machinery gene
  RAB70_RS09030 (RAB70_09030) pilA/pilAI 2134632..2135024 (+) 393 WP_148828476.1 pilin Machinery gene
  RAB70_RS09035 (RAB70_09035) - 2135130..2135555 (+) 426 WP_148828475.1 pilin -
  RAB70_RS09040 (RAB70_09040) - 2135584..2137422 (+) 1839 WP_148828474.1 hypothetical protein -
  RAB70_RS09045 (RAB70_09045) - 2137507..2138640 (-) 1134 WP_148828473.1 glycosyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45804.21 Da        Isoelectric Point: 10.1706

>NTDB_id=868273 RAB70_RS09025 WP_148828512.1 2133008..2134267(-) (pilC) [Xanthomonas sontii strain PPL1]
MSATRSAVKKEPVARNTSQQVPFVWEGTDKRGIKMKGEQIAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAVSKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVTSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWM
LLLLLVGTIGGFIFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYET
AVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=868273 RAB70_RS09025 WP_148828512.1 2133008..2134267(-) (pilC) [Xanthomonas sontii strain PPL1]
ATGTCCGCAACTCGCAGCGCAGTCAAGAAAGAGCCAGTCGCGCGCAATACCAGTCAACAGGTGCCCTTCGTCTGGGAGGG
TACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGATCGCCAAGAATGCCAACTTGTTGCGCGCAGAACTGCGCCGCC
AGGGCATCACGCCATCGGTGGTCAAACCCAAACCCAAGCCTCTGTTTGGCGCAGCGGGTAAAAAGATCACCCCGAAGGAC
ATCGCCTTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCGGGCGTCCCGATCGTGGGCTCACTGGAAATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGATGGTCGATCAGATCCGCACCGATATCGAGGGCGGCTCCTCACTCTATGAAG
CGGTCAGCAAGCATCCAGTTCAGTTCGACGAGCTGTACCGCAACCTGGTCAAGGCCGGCGAAGGTGCCGGCGTACTCGAA
ACGGTGCTGGAGACGGTTGCCACCTACAAGGAGAACATCGAGGCCCTGAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
GGCCATGGTGATGGCGGTTGCCCTGATCGTTACCTCGATCCTGCTGGTCTGGGTCGTACCGCAGTTCGAAGATGTATTCA
AAGGCTTCGGTGCGGAACTGCCGGCCTTCACCCAGATGATCGTCGCGGCATCGCGCTTCATGGTGTCGTACTGGTGGATG
CTGTTGCTCTTGCTAGTCGGCACCATCGGCGGCTTCATCTTCGCCTACAAACGTTCGCCTGCGATGCAGCATGGGATGGA
CCGACTGGTGCTCAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTCGCGCGTTTCTCGCGCACCTTGGCGG
TGACCTTCCGCGCCGGTGTACCGCTGGTGGAGGCCCTGGACATCGTCGCAGGCGCCACCGGAAATAGCGTCTACGAGACG
GCTGTACTGCGCATGCGTGACGATGTGGCGGTCGGCTATCCGGTCAATGTGGCGATGAAGCAGACCAATCTGTTTCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTCGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCCTTGAGCAGCCTGATCGAGCCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Acinetobacter baylyi ADP1

52.206

97.375

0.508
  pilC Acinetobacter baumannii D1279779

51.716

97.375

0.504
  pilC Legionella pneumophila strain ERS1305867

52.228

96.42

0.504
  pilG Neisseria gonorrhoeae MS11

44.25

95.465

0.422
  pilG Neisseria meningitidis 44/76-A

43.75

95.465

0.418
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilC Vibrio campbellii strain DS40M4

40.704

94.988

0.387