Detailed information NTG0867070

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: Q8W18_RS16715
• Genome accession: NZ_CP132058
• Coordinates: 3227608..3228294 (-)
• Length: 228 a.a.
• NCBI ID: WP_306011282.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain F12-21
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3222608..3233294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q8W18_RS16680 (Q8W18_16680)	fliW	3222742..3223176 (-)	435	WP_058013563.1	flagellar assembly protein FliW	-
Q8W18_RS16685 (Q8W18_16685)	-	3223204..3223782 (-)	579	WP_306011280.1	DUF6470 family protein	-
Q8W18_RS16690 (Q8W18_16690)	flgL	3223831..3224742 (-)	912	WP_169055790.1	flagellar hook-associated protein FlgL	-
Q8W18_RS16695 (Q8W18_16695)	flgK	3224752..3226272 (-)	1521	WP_306011281.1	flagellar hook-associated protein FlgK	-
Q8W18_RS16700 (Q8W18_16700)	-	3226288..3226770 (-)	483	WP_169055792.1	flagellar protein FlgN	-
Q8W18_RS16705 (Q8W18_16705)	flgM	3226789..3227052 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
Q8W18_RS16710 (Q8W18_16710)	-	3227132..3227551 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
Q8W18_RS16715 (Q8W18_16715)	comFC	3227608..3228294 (-)	687	WP_306011282.1	ComF family protein	Machinery gene
Q8W18_RS16720 (Q8W18_16720)	-	3228291..3228584 (-)	294	WP_106066158.1	late competence development ComFB family protein	-
Q8W18_RS16725 (Q8W18_16725)	comFA	3228651..3230030 (-)	1380	WP_306011283.1	DEAD/DEAH box helicase	Machinery gene
Q8W18_RS16730 (Q8W18_16730)	-	3230150..3230992 (-)	843	WP_058013557.1	DegV family protein	-
Q8W18_RS16735 (Q8W18_16735)	degU	3231210..3231899 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
Q8W18_RS16740 (Q8W18_16740)	degS	3231964..3233139 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26020.28 Da
• Isoelectric Point: 9.6866

>NTDB_id=867070 Q8W18_RS16715 WP_306011282.1 3227608..3228294(-) (comFC) [Bacillus pumilus strain F12-21]
MICQICEAHFVASFTWKSLLLLNNDRLCIACKHRLEKIQRPICPACGRAQSNDQLCQDCSRWKERLDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSEERLNERGFNQSVILASLIGQPLLQPLVKIH
QSKQSKKKKNERLDQKGMFQINQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=867070 Q8W18_RS16715 WP_306011282.1 3227608..3228294(-) (comFC) [Bacillus pumilus strain F12-21]
TTGATCTGCCAAATTTGTGAGGCGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATAATGATCGTCT
ATGTATAGCATGTAAGCATCGCCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCTTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCATTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCGGTATTTAAGCGTTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTGAAGAAAGACTAA
ATGAAAGAGGGTTTAATCAGTCCGTTATACTTGCTTCCTTGATTGGTCAGCCGCTTCTTCAGCCGCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAATCAGACAGATGCCAT
CGTTCAAAGGGATGTTATCTTAATTGACGATATTTATACAACAGGGGCTACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCATTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (137-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.13	100	0.496
comFC/cflB	Streptococcus mitis NCTC 12261	39.13	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.13	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	38.261	100	0.386
comFC/cflB	Streptococcus pneumoniae Rx1	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae D39	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae R6	37.991	100	0.382