Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q8W18_RS16725 Genome accession   NZ_CP132058
Coordinates   3228651..3230030 (-) Length   459 a.a.
NCBI ID   WP_306011283.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3223651..3235030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS16690 (Q8W18_16690) flgL 3223831..3224742 (-) 912 WP_169055790.1 flagellar hook-associated protein FlgL -
  Q8W18_RS16695 (Q8W18_16695) flgK 3224752..3226272 (-) 1521 WP_306011281.1 flagellar hook-associated protein FlgK -
  Q8W18_RS16700 (Q8W18_16700) - 3226288..3226770 (-) 483 WP_169055792.1 flagellar protein FlgN -
  Q8W18_RS16705 (Q8W18_16705) flgM 3226789..3227052 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q8W18_RS16710 (Q8W18_16710) - 3227132..3227551 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  Q8W18_RS16715 (Q8W18_16715) comFC 3227608..3228294 (-) 687 WP_306011282.1 ComF family protein Machinery gene
  Q8W18_RS16720 (Q8W18_16720) - 3228291..3228584 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  Q8W18_RS16725 (Q8W18_16725) comFA 3228651..3230030 (-) 1380 WP_306011283.1 DEAD/DEAH box helicase Machinery gene
  Q8W18_RS16730 (Q8W18_16730) - 3230150..3230992 (-) 843 WP_058013557.1 DegV family protein -
  Q8W18_RS16735 (Q8W18_16735) degU 3231210..3231899 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  Q8W18_RS16740 (Q8W18_16740) degS 3231964..3233139 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  Q8W18_RS16745 (Q8W18_16745) - 3233361..3234029 (+) 669 WP_058013556.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52498.46 Da        Isoelectric Point: 10.1861

>NTDB_id=867071 Q8W18_RS16725 WP_306011283.1 3228651..3230030(-) (comFA) [Bacillus pumilus strain F12-21]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLNWLEEKGLVMRTPAIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTKECGFLYEWTGPQMEEVCHTELTWQGNLSKGQKRASEKLIKAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRIYLSATPSNKMIKDVFRGQLEAIKIPLRFHQQPLPVPSFHWIGNWKKKLKKNQLPSKVMNWMQN
HITKKRRALFFVPSISTMKKVTKVLRKHHLKVEGVSAEDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRNMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=867071 Q8W18_RS16725 WP_306011283.1 3228651..3230030(-) (comFA) [Bacillus pumilus strain F12-21]
TTGAACATGGACAAAGCAATGGAACTAGGGCAGCACCTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCGCA
GTCTGATTTGAATTGGTTGGAGGAGAAAGGGTTAGTTATGCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTATCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCGCAAATGGAAGAAGTATG
TCACACGGAATTAACATGGCAGGGAAACCTATCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCAAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGGATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
TCAAGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTCATCGCTACAACTC
ATCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATTGATGAAGTGGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTCAGGATTTATTTAAGTGCGACGCCGTCTAACAAAAT
GATAAAAGATGTATTTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCCGTCCCAT
CCTTTCATTGGATAGGAAATTGGAAGAAGAAATTGAAGAAGAATCAGCTCCCATCTAAAGTAATGAATTGGATGCAGAAT
CATATTACAAAAAAGAGAAGGGCTTTATTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAAGGTAGAAGGGGTGTCTGCTGAAGATCCAGACAGGAAACAAAAGGTCCAGCAATTCAGAGATGACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACCATTCCAAATGTACAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAATATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.967

99.129

0.525