Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   Q8W18_RS16735 Genome accession   NZ_CP132058
Coordinates   3231210..3231899 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain F12-21     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3226210..3236899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS16700 (Q8W18_16700) - 3226288..3226770 (-) 483 WP_169055792.1 flagellar protein FlgN -
  Q8W18_RS16705 (Q8W18_16705) flgM 3226789..3227052 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q8W18_RS16710 (Q8W18_16710) - 3227132..3227551 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  Q8W18_RS16715 (Q8W18_16715) comFC 3227608..3228294 (-) 687 WP_306011282.1 ComF family protein Machinery gene
  Q8W18_RS16720 (Q8W18_16720) - 3228291..3228584 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  Q8W18_RS16725 (Q8W18_16725) comFA 3228651..3230030 (-) 1380 WP_306011283.1 DEAD/DEAH box helicase Machinery gene
  Q8W18_RS16730 (Q8W18_16730) - 3230150..3230992 (-) 843 WP_058013557.1 DegV family protein -
  Q8W18_RS16735 (Q8W18_16735) degU 3231210..3231899 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  Q8W18_RS16740 (Q8W18_16740) degS 3231964..3233139 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  Q8W18_RS16745 (Q8W18_16745) - 3233361..3234029 (+) 669 WP_058013556.1 YigZ family protein -
  Q8W18_RS16750 (Q8W18_16750) - 3234014..3235102 (+) 1089 WP_169055794.1 LCP family protein -
  Q8W18_RS16755 (Q8W18_16755) - 3235138..3236205 (-) 1068 WP_169055795.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=867072 Q8W18_RS16735 WP_008348273.1 3231210..3231899(-) (degU) [Bacillus pumilus strain F12-21]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=867072 Q8W18_RS16735 WP_008348273.1 3231210..3231899(-) (degU) [Bacillus pumilus strain F12-21]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGATGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGTTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGTCGCCTAGCGACTAGCGGTGTTTCAGCACATCCTCAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGATGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996