Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5621_RS02020 Genome accession   NZ_AP024618
Coordinates   427108..428376 (-) Length   422 a.a.
NCBI ID   WP_221050286.1    Uniprot ID   -
Organism   Shewanella carassii strain TUM17387     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422108..433376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5621_RS19975 - 423781..424029 (-) 249 Protein_367 transposase -
  K5621_RS01995 (TUM17387_03730) mutT 424109..424504 (-) 396 WP_188726048.1 8-oxo-dGTP diphosphatase MutT -
  K5621_RS02000 (TUM17387_03740) yacG 424507..424719 (-) 213 WP_100142958.1 DNA gyrase inhibitor YacG -
  K5621_RS02005 (TUM17387_03750) zapD 424764..425504 (-) 741 WP_100142959.1 cell division protein ZapD -
  K5621_RS02010 (TUM17387_03760) coaE 425501..426112 (-) 612 WP_100142960.1 dephospho-CoA kinase -
  K5621_RS02015 (TUM17387_03770) pilD 426113..427027 (-) 915 WP_100142961.1 A24 family peptidase Machinery gene
  K5621_RS02020 (TUM17387_03780) pilC 427108..428376 (-) 1269 WP_221050286.1 type II secretion system F family protein Machinery gene
  K5621_RS02025 (TUM17387_03790) pilB 428462..430168 (-) 1707 WP_221050287.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5621_RS02030 (TUM17387_03800) - 430177..430629 (-) 453 WP_221050288.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K5621_RS02035 (TUM17387_03810) nadC 431497..432357 (-) 861 WP_100142965.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5621_RS02040 (TUM17387_03820) ampD 432580..433125 (+) 546 WP_221050289.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45903.16 Da        Isoelectric Point: 10.2556

>NTDB_id=86670 K5621_RS02020 WP_221050286.1 427108..428376(-) (pilC) [Shewanella carassii strain TUM17387]
MATATAAAKNNKTKKKGAKAQPQIYTFTWKGLNRDGKQSSGELRGASIAEIKTLLKSQGINPKTVRKKSASLFGGDKKIK
AMDIAVITRQIATMLAAGVPLVTSIELIARGHEKNRMRVLLGTVLADVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFERIATYKEKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFESIFAGFGAELPAFTQLIVNISRALQST
WYIFLAAIVISVWLFVRAHRNSEHFRNRIDEMVLKIPLIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTRLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=86670 K5621_RS02020 WP_221050286.1 427108..428376(-) (pilC) [Shewanella carassii strain TUM17387]
ATGGCAACAGCAACGGCGGCAGCCAAAAACAATAAAACCAAGAAGAAAGGTGCCAAGGCTCAACCCCAGATCTATACCTT
TACCTGGAAGGGGCTCAACCGCGACGGCAAGCAAAGCTCCGGCGAGTTGCGCGGTGCCAGCATAGCCGAAATCAAAACCC
TGCTAAAAAGTCAGGGGATCAACCCCAAGACGGTACGCAAAAAATCGGCTTCGCTGTTTGGTGGCGATAAAAAAATCAAA
GCGATGGATATTGCGGTGATCACCCGCCAGATAGCCACCATGCTGGCCGCCGGGGTGCCCCTGGTAACCTCCATCGAACT
GATCGCCCGCGGCCATGAAAAGAATAGGATGCGGGTTCTGCTGGGCACAGTGCTGGCCGATGTTCAGGCCGGTATTCCCC
TTTCCGATGCCCTGCGTCCTCATAGAGTCTATTTTGATGACCTTTATGTCGACTTGGTCGCTGCCGGTGAACACTCCGGC
TCACTGGATGCAGTCTTTGAACGTATTGCCACTTACAAGGAAAAGGCCGAGGCGCTCAAGTCCAAGATCAAAAAGGCCAT
GTTCTATCCGGCGGCCGTGGTTGTGGTAGCCATCGCCGTGACCGTACTGTTGCTGTTGTTTGTGGTACCCCAATTTGAAA
GCATATTTGCTGGCTTTGGTGCCGAGCTGCCCGCATTTACCCAGTTGATAGTCAATATCAGCCGCGCCCTGCAGAGTACC
TGGTATATTTTCCTGGCGGCCATTGTCATCAGTGTTTGGCTATTTGTGCGCGCCCATCGCAACTCTGAGCATTTCCGAAA
CCGTATAGATGAAATGGTGCTTAAAATTCCATTGATAGGTGAAATTCTTCATAAAGGGGCCATGGCCCGTTTCGCCCGCA
CCTTGGCCACAACCTTTGCCGCCGGTGTACCTCTGATCGATGGCTTGGAGTCTGCCGCCGGGGCTTCGGGTAACTATGTC
TACCGCAAGGCGCTGTTAAATGTGCGTACCGAAGTGATGGCAGGGATGCAGATGAACGTGGCGATGCGCACCACCAGGCT
GTTTCCGGATATGCTGATCCAGATGGTGATGATAGGCGAAGAGTCCGGCTCACTGGACAATATGCTCAACAAGATTGCCA
ATATCTATGAGATGCAGGTGGATGATGCCGTTGATGGCCTCTCCAGCCTGATTGAACCTATTATGATGGTGGTTATCGGC
ACCCTGGTAGGGGGGCTAATCGTTGGTATGTACCTGCCTATCTTCCAAATGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.962

93.602

0.533
  pilC Acinetobacter baylyi ADP1

50.246

96.209

0.483
  pilC Legionella pneumophila strain ERS1305867

49.752

95.735

0.476
  pilC Acinetobacter baumannii D1279779

48.775

96.682

0.472
  pilC Vibrio cholerae strain A1552

46.482

94.313

0.438
  pilC Vibrio campbellii strain DS40M4

45.161

95.498

0.431
  pilG Neisseria meningitidis 44/76-A

43.264

91.469

0.396
  pilG Neisseria gonorrhoeae MS11

43.264

91.469

0.396

Multiple sequence alignment