Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q7W79_RS22360 Genome accession   NZ_CP131931
Coordinates   3132341..3133453 (-) Length   370 a.a.
NCBI ID   WP_069497671.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3127341..3138453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS22330 (Q7W79_22775) hemF 3127802..3128719 (-) 918 WP_025534801.1 oxygen-dependent coproporphyrinogen oxidase -
  Q7W79_RS22335 (Q7W79_22780) - 3128767..3129324 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  Q7W79_RS22340 (Q7W79_22785) purE 3129524..3130009 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  Q7W79_RS22345 (Q7W79_22790) - 3130014..3131141 (+) 1128 WP_015297510.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  Q7W79_RS22350 (Q7W79_22795) - 3131211..3131780 (-) 570 WP_273979224.1 type I DNA topoisomerase -
  Q7W79_RS22355 (Q7W79_22800) - 3131859..3132338 (-) 480 WP_005461440.1 DUF494 family protein -
  Q7W79_RS22360 (Q7W79_22805) dprA 3132341..3133453 (-) 1113 WP_069497671.1 DNA-processing protein DprA Machinery gene
  Q7W79_RS22365 (Q7W79_22810) - 3133437..3134531 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  Q7W79_RS22370 (Q7W79_22815) def 3134670..3135188 (+) 519 WP_005461416.1 peptide deformylase -
  Q7W79_RS22375 (Q7W79_22820) fmt 3135222..3136169 (+) 948 WP_029804725.1 methionyl-tRNA formyltransferase -
  Q7W79_RS22380 (Q7W79_22825) rsmB 3136250..3137533 (+) 1284 WP_069547752.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39858.50 Da        Isoelectric Point: 6.2329

>NTDB_id=866362 Q7W79_RS22360 WP_069497671.1 3132341..3133453(-) (dprA) [Vibrio parahaemolyticus strain RP0132]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPCNIINSSSEQLYQLGLTNKQLQAWASVDKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=866362 Q7W79_RS22360 WP_069497671.1 3132341..3133453(-) (dprA) [Vibrio parahaemolyticus strain RP0132]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTTGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGTCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCCCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCTAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGCTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

85.405

100

0.854
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.478
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373