Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q7W79_RS09865 Genome accession   NZ_CP131931
Coordinates   415502..416725 (-) Length   407 a.a.
NCBI ID   WP_023585959.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410502..421725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS09825 (Q7W79_09825) rpsP 410564..410812 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  Q7W79_RS09830 (Q7W79_09830) rimM 410841..411389 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  Q7W79_RS09835 (Q7W79_09835) trmD 411417..412160 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q7W79_RS09840 (Q7W79_09840) rplS 412202..412555 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  Q7W79_RS09845 (Q7W79_09845) yacG 412922..413116 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  Q7W79_RS09850 (Q7W79_09850) zapD 413185..413925 (-) 741 WP_023624252.1 cell division protein ZapD -
  Q7W79_RS09855 (Q7W79_09855) coaE 413953..414567 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  Q7W79_RS09860 (Q7W79_09860) pilD 414568..415437 (-) 870 WP_140154970.1 A24 family peptidase Machinery gene
  Q7W79_RS09865 (Q7W79_09865) pilC 415502..416725 (-) 1224 WP_023585959.1 type II secretion system F family protein Machinery gene
  Q7W79_RS09870 (Q7W79_09870) pilB 416749..418434 (-) 1686 WP_258510752.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q7W79_RS09875 (Q7W79_09875) - 418434..418898 (-) 465 WP_021450016.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q7W79_RS09880 (Q7W79_09880) nadC 419162..420049 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Q7W79_RS09885 (Q7W79_09885) ampD 420142..420693 (+) 552 WP_005479703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45223.41 Da        Isoelectric Point: 10.3996

>NTDB_id=866343 Q7W79_RS09865 WP_023585959.1 415502..416725(-) (pilC) [Vibrio parahaemolyticus strain RP0132]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSMRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=866343 Q7W79_RS09865 WP_023585959.1 415502..416725(-) (pilC) [Vibrio parahaemolyticus strain RP0132]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATATCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTAAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTATGCGTTCTGACTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAGTTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTAGTCACCGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.995

100

0.86
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.5

98.28

0.418
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria meningitidis 44/76-A

39.901

99.754

0.398