Detailed information NTG0866342

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q7W79_RS09860
• Genome accession: NZ_CP131931
• Coordinates: 414568..415437 (-)
• Length: 289 a.a.
• NCBI ID: WP_140154970.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain RP0132
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 409568..420437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7W79_RS09825 (Q7W79_09825)	rpsP	410564..410812 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
Q7W79_RS09830 (Q7W79_09830)	rimM	410841..411389 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
Q7W79_RS09835 (Q7W79_09835)	trmD	411417..412160 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
Q7W79_RS09840 (Q7W79_09840)	rplS	412202..412555 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
Q7W79_RS09845 (Q7W79_09845)	yacG	412922..413116 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
Q7W79_RS09850 (Q7W79_09850)	zapD	413185..413925 (-)	741	WP_023624252.1	cell division protein ZapD	-
Q7W79_RS09855 (Q7W79_09855)	coaE	413953..414567 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
Q7W79_RS09860 (Q7W79_09860)	pilD	414568..415437 (-)	870	WP_140154970.1	A24 family peptidase	Machinery gene
Q7W79_RS09865 (Q7W79_09865)	pilC	415502..416725 (-)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
Q7W79_RS09870 (Q7W79_09870)	pilB	416749..418434 (-)	1686	WP_258510752.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q7W79_RS09875 (Q7W79_09875)	-	418434..418898 (-)	465	WP_021450016.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
Q7W79_RS09880 (Q7W79_09880)	nadC	419162..420049 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32404.50 Da
• Isoelectric Point: 7.5706

>NTDB_id=866342 Q7W79_RS09860 WP_140154970.1 414568..415437(-) (pilD) [Vibrio parahaemolyticus strain RP0132]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQNAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=866342 Q7W79_RS09860 WP_140154970.1 414568..415437(-) (pilD) [Vibrio parahaemolyticus strain RP0132]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAAACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45