Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5625_RS19460 Genome accession   NZ_AP024609
Coordinates   4323488..4324753 (+) Length   421 a.a.
NCBI ID   WP_144133986.1    Uniprot ID   -
Organism   Shewanella algae strain ATCC 49138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4318488..4329753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5625_RS19440 (TUM3811_38560) ampD 4318747..4319292 (-) 546 WP_025012051.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  K5625_RS19445 (TUM3811_38570) nadC 4319484..4320344 (+) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5625_RS19450 (TUM3811_38580) - 4321201..4321623 (+) 423 WP_144133982.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K5625_RS19455 (TUM3811_38590) pilB 4321623..4323329 (+) 1707 WP_221051585.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5625_RS19460 (TUM3811_38600) pilC 4323488..4324753 (+) 1266 WP_144133986.1 type II secretion system F family protein Machinery gene
  K5625_RS19465 (TUM3811_38610) pilD 4324829..4325743 (+) 915 WP_221051586.1 A24 family peptidase Machinery gene
  K5625_RS19470 (TUM3811_38620) coaE 4325744..4326355 (+) 612 WP_025012056.1 dephospho-CoA kinase -
  K5625_RS19475 (TUM3811_38630) zapD 4326352..4327092 (+) 741 WP_028779562.1 cell division protein ZapD -
  K5625_RS19480 (TUM3811_38640) yacG 4327137..4327349 (+) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5625_RS19485 (TUM3811_38650) mutT 4327349..4327747 (+) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45968.28 Da        Isoelectric Point: 10.2954

>NTDB_id=86495 K5625_RS19460 WP_144133986.1 4323488..4324753(+) (pilC) [Shewanella algae strain ATCC 49138]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGHNRDGKLSSGELRGTSITEVKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKIRVLLGTVLADVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSGS
LDAVFDRIATYKEKSEALKSKIKKAMFYPAAVVIVAIAVTALLLVVVVPQFEDIFKGFGAELPAFTQLIVNISRWLQNTW
YLFLAGIVIGIWLFIRAHRNSEHFRNRIDEMMLKIPLIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=86495 K5625_RS19460 WP_144133986.1 4323488..4324753(+) (pilC) [Shewanella algae strain ATCC 49138]
ATGGCAACTGCAACGGCGACAGCTAAAAACAATAAAGCCAAAAATAAAGGCGCCAAGGCCCAACCCAAGATCCATACCTT
TACCTGGAAGGGGCATAATCGCGATGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGTATCACCGAAGTAAAAACCC
TGCTTAAAAGCCAGGGGATCAATCCCAAAACGGTACGTAAAAAATCAGCGTCCATGTTTGGCGATAAAAAGATTAAGCCG
ATGGATATTGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCCGGCGTGCCACTGGTTACTTCCATCGAATTAAT
AGCTCGCGGCCATGAAAAAAACAAGATACGAGTCCTTCTAGGCACTGTGCTGGCCGATGTCCAGGCCGGTATACCACTCT
CAGATGCCCTCCGCCCACACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGTGAGCACTCAGGTTCT
TTGGATGCTGTATTCGACCGTATCGCCACCTATAAAGAAAAATCAGAGGCCCTTAAGTCGAAAATCAAGAAAGCCATGTT
CTATCCCGCGGCTGTAGTAATTGTCGCCATTGCAGTAACAGCTTTATTGCTAGTCGTTGTAGTACCTCAATTTGAGGATA
TTTTTAAAGGTTTTGGTGCTGAACTTCCTGCCTTTACCCAATTGATTGTCAATATCAGTCGTTGGCTACAAAACACCTGG
TACCTGTTTTTAGCCGGTATTGTTATCGGTATCTGGCTGTTTATACGTGCTCATCGTAACTCTGAGCACTTCCGCAATCG
TATCGATGAAATGATGCTTAAGATCCCTTTAATAGGAGAAATTCTCCATAAAGGCGCCATGGCTCGGTTTGCCCGCACAT
TGGCCACCACCTTTGCCGCCGGGGTGCCGCTGATTGATGGACTGGAGTCTGCCGCCGGCGCCTCCGGTAATTATGTTTAC
CGCAAGGCGCTGTTGAATGTGCGTACCGAAGTGATGGCCGGAATGCAGATGAACGTGGCTATGCGCACTACCAAGCTGTT
TCCCGATATGTTGATCCAGATGGTGATGATAGGTGAAGAGTCCGGCTCATTGGATAACATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTAATAGAACCTATTATGATGGTAGTAATCGGTACC
ATAGTCGGCGGACTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.391

94.774

0.534
  pilC Acinetobacter baylyi ADP1

49.877

96.675

0.482
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Acinetobacter baumannii D1279779

48.039

96.912

0.466
  pilC Vibrio cholerae strain A1552

47.132

95.249

0.449
  pilC Vibrio campbellii strain DS40M4

45.792

95.962

0.439
  pilG Neisseria meningitidis 44/76-A

42.271

98.337

0.416
  pilG Neisseria gonorrhoeae MS11

42.271

98.337

0.416

Multiple sequence alignment