Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   WHO32_RS00140 Genome accession   NZ_CP148112
Coordinates   28459..29055 (+) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23459..34055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS00110 sleL 23460..24743 (-) 1284 WP_003247133.1 glycoside hydrolase family 18 protein -
  WHO32_RS00115 yaaI 24813..25358 (-) 546 WP_003247139.1 isochorismatase family cysteine hydrolase -
  WHO32_RS00120 tadA 25444..25929 (+) 486 WP_003247140.1 tRNA adenosine(34) deaminase TadA -
  WHO32_RS00130 dnaX 26406..28097 (+) 1692 WP_003247135.1 DNA polymerase III subunit gamma/tau -
  WHO32_RS00135 ebfC 28121..28444 (+) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  WHO32_RS00140 recR 28459..29055 (+) 597 WP_003225425.1 recombination protein RecR Machinery gene
  WHO32_RS00145 yaaL 29073..29297 (+) 225 WP_003242387.1 YaaL family protein -
  WHO32_RS00150 bofA 29364..29627 (+) 264 WP_003225421.1 sigma-K factor-processing regulator BofA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=864541 WHO32_RS00140 WP_003225425.1 28459..29055(+) (recR) [Bacillus subtilis isolate FELIX_MS504]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=864541 WHO32_RS00140 WP_003225425.1 28459..29055(+) (recR) [Bacillus subtilis isolate FELIX_MS504]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAAGACGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATCGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515