Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q5709_RS00575 Genome accession   NZ_CP131483
Coordinates   120508..121638 (-) Length   376 a.a.
NCBI ID   WP_005017255.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 115508..126638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS00545 (Q5709_00545) - 115637..115978 (-) 342 WP_005017265.1 RcnB family protein -
  Q5709_RS00550 (Q5709_00550) - 116173..116715 (-) 543 WP_005017263.1 glutathione peroxidase -
  Q5709_RS00555 (Q5709_00555) - 116842..117456 (-) 615 WP_005017262.1 hypothetical protein -
  Q5709_RS00560 (Q5709_00560) - 117671..118426 (-) 756 WP_005017260.1 AraC family transcriptional regulator -
  Q5709_RS00565 (Q5709_00565) - 118542..119435 (+) 894 WP_005017258.1 DMT family transporter -
  Q5709_RS00570 (Q5709_00570) - 119894..120463 (-) 570 WP_005017257.1 L-threonylcarbamoyladenylate synthase -
  Q5709_RS00575 (Q5709_00575) dprA 120508..121638 (-) 1131 WP_005017255.1 DNA-processing protein DprA Machinery gene
  Q5709_RS00580 (Q5709_00580) tsaP 121654..122802 (-) 1149 WP_005017253.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  Q5709_RS00585 (Q5709_00585) def 122927..123457 (+) 531 WP_005017251.1 peptide deformylase -
  Q5709_RS00590 (Q5709_00590) - 123556..123972 (+) 417 WP_005017249.1 DUF2946 family protein -
  Q5709_RS00595 (Q5709_00595) - 124038..126101 (+) 2064 WP_005017248.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41789.56 Da        Isoelectric Point: 6.5819

>NTDB_id=862618 Q5709_RS00575 WP_005017255.1 120508..121638(-) (dprA) [Acinetobacter radioresistens strain MC-14]
MIAELSQLHYHSLKLWYLVQHSVSSFNQLVEYFGSAEQATTPAALARWGNLKLHANHSKRAQEFYSATGQAEFEQLTQRV
LASCDFILVPEDILYPQQLHPYTDKPPILFGQGSAQALSQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLALG
IDEAAHQGALQHQRTIAVVGTGLDLVYPAHNRKLQEQILQYGGTIVSEFLPGTQPLKHHFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQRAADQGKIIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQLIEDLALPTQWHSQQQKVSSVPEPAQVPEH
LFELYQQLDWVGLDLDQIALKLPLSAAELTGHLMELELLGLCVQQSGRYLRCRPGF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=862618 Q5709_RS00575 WP_005017255.1 120508..121638(-) (dprA) [Acinetobacter radioresistens strain MC-14]
ATGATTGCCGAATTATCGCAGCTTCATTATCACAGTCTGAAGCTGTGGTATTTGGTCCAGCATTCAGTTTCAAGTTTTAA
CCAGCTGGTTGAGTATTTTGGCAGTGCTGAACAGGCAACCACTCCGGCAGCATTAGCGCGCTGGGGCAATTTAAAACTGC
ATGCCAATCATTCCAAGCGGGCACAGGAATTTTATAGCGCAACCGGTCAGGCTGAGTTTGAGCAACTGACCCAACGGGTA
TTGGCAAGTTGCGATTTTATTTTAGTGCCGGAAGATATACTGTATCCGCAGCAGCTGCACCCTTATACAGATAAGCCTCC
GATCCTGTTTGGCCAAGGTTCTGCTCAAGCCTTAAGTCAACCCCAGATCGCGATTGTAGGCAGTCGCAAACCAAGCCCGC
ATGGCCGGCAAGTAGCCTACGACTTTGCGTATTATCTGAGTGAAAAAGGGTTTTATATTACCAGTGGACTTGCCTTGGGA
ATTGACGAGGCAGCACATCAAGGGGCATTGCAGCATCAGCGTACTATTGCTGTAGTCGGAACCGGACTGGATCTGGTCTA
TCCAGCCCATAACCGTAAGCTTCAAGAACAGATACTTCAATACGGCGGTACAATCGTCAGTGAGTTTTTACCGGGAACCC
AACCACTCAAGCATCATTTTCCACGCCGTAACCGTATTGTTAGTGGTTTGAGTCTAGGTGTACTGGTGGCAGAAGCCGCT
TTAGAAAGTGGTTCATTGATTACTGCACAGCGTGCCGCCGATCAGGGTAAGATTATTTTTGCCATTCCCGGCCATATCTA
CAGCGAGCATCATCAAGGCTGTCATCAACTCATCCGTGAAGGCGCCATACTGGTAGATCATCCGGAACAGCTGATTGAAG
ATCTGGCTTTACCGACCCAGTGGCATAGCCAGCAACAAAAGGTAAGCAGTGTACCCGAGCCGGCACAGGTACCTGAACAT
CTATTTGAACTGTACCAACAACTAGACTGGGTAGGACTGGATCTAGACCAGATTGCTCTTAAATTGCCATTATCTGCGGC
TGAATTGACCGGACATCTGATGGAACTTGAGTTACTTGGACTATGTGTTCAGCAATCTGGGCGCTATCTGCGTTGCCGTC
CGGGCTTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-286)

DprA winged helix domain (DprA_WH)

(324-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.725

100

0.681
  dprA Acinetobacter baumannii D1279779

67.725

100

0.681
  dprA Acinetobacter baylyi ADP1

66.053

100

0.668
  dprA Neisseria meningitidis strain C311

37.783

100

0.399
  dprA Neisseria meningitidis MC58

37.783

100

0.399
  dprA Neisseria gonorrhoeae MS11

36.951

100

0.38
  dprA Neisseria gonorrhoeae strain FA1090

36.693

100

0.378