Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   Q5709_RS00580 Genome accession   NZ_CP131483
Coordinates   121654..122802 (-) Length   382 a.a.
NCBI ID   WP_005017253.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116654..127802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS00555 (Q5709_00555) - 116842..117456 (-) 615 WP_005017262.1 hypothetical protein -
  Q5709_RS00560 (Q5709_00560) - 117671..118426 (-) 756 WP_005017260.1 AraC family transcriptional regulator -
  Q5709_RS00565 (Q5709_00565) - 118542..119435 (+) 894 WP_005017258.1 DMT family transporter -
  Q5709_RS00570 (Q5709_00570) - 119894..120463 (-) 570 WP_005017257.1 L-threonylcarbamoyladenylate synthase -
  Q5709_RS00575 (Q5709_00575) dprA 120508..121638 (-) 1131 WP_005017255.1 DNA-processing protein DprA Machinery gene
  Q5709_RS00580 (Q5709_00580) tsaP 121654..122802 (-) 1149 WP_005017253.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  Q5709_RS00585 (Q5709_00585) def 122927..123457 (+) 531 WP_005017251.1 peptide deformylase -
  Q5709_RS00590 (Q5709_00590) - 123556..123972 (+) 417 WP_005017249.1 DUF2946 family protein -
  Q5709_RS00595 (Q5709_00595) - 124038..126101 (+) 2064 WP_005017248.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42107.37 Da        Isoelectric Point: 9.4267

>NTDB_id=862619 Q5709_RS00580 WP_005017253.1 121654..122802(-) (tsaP) [Acinetobacter radioresistens strain MC-14]
MKKVFKGSALRALGFKKQFIALAICSSLGIIMPGMAEAASRNINPPSLKASAPNVYVVKRGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLDGRPLIGKDEGDGCEGIIRRYGGQTSMQPQIRVESLNNAIPVIPLEHIRVWLERT
LIMSPDSVINTPYILGTADNRVLAAAGQTVYARGNGLQVGQRYAVYREGEPYIFTDANGKSYNAGVELLQVASGVAVQNE
QDITTLELTQSYNGEVRRGDRVMPEYDPMLPTLFYPTIDHQVTEGGQVIRVMGSIGTAARHSVVTVNRGNIHGVQSGQVF
SVYQQGEVVRDPKTREQIKLPSQKVGNIMIFRTFDQLSYAYVLDSALPIKVGSGIQAPPMAE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=862619 Q5709_RS00580 WP_005017253.1 121654..122802(-) (tsaP) [Acinetobacter radioresistens strain MC-14]
ATGAAAAAAGTTTTCAAAGGCAGCGCACTTCGTGCCTTGGGGTTTAAAAAGCAGTTTATTGCTCTCGCAATCTGTTCAAG
TTTGGGAATAATCATGCCTGGCATGGCTGAAGCAGCCAGCCGTAATATAAATCCGCCCTCTTTAAAAGCCAGTGCTCCTA
ATGTTTATGTGGTCAAAAGAGGGGATACTTTATGGGATATCGCCGGAAAATTCTTGAGTAAGCCGTGGCGCTGGCCAGAA
ATCTGGGCCAGCAACAAACATGTCAAGAATCCACACTGGATTTATCCGGGCGACCGTTTATTGCTGTGTACTCTAGACGG
ACGACCGCTGATCGGTAAAGATGAAGGTGACGGCTGTGAAGGCATTATTCGCCGTTATGGTGGCCAGACCAGTATGCAGC
CACAAATTCGTGTTGAATCCCTAAATAATGCTATTCCAGTTATTCCACTTGAACATATTCGGGTCTGGCTGGAACGCACC
CTGATAATGTCACCAGATTCAGTGATCAATACCCCCTATATTTTAGGCACGGCTGATAACCGGGTATTGGCTGCTGCCGG
TCAAACCGTTTATGCACGCGGTAATGGTCTGCAAGTTGGTCAGCGTTATGCAGTTTATCGTGAGGGTGAGCCTTACATAT
TCACCGATGCTAATGGCAAGTCATATAATGCCGGTGTAGAGCTGCTTCAGGTGGCTTCCGGCGTAGCTGTGCAGAATGAA
CAGGATATTACTACGCTAGAATTAACGCAAAGTTATAATGGGGAAGTCCGTCGTGGGGATCGGGTCATGCCAGAATATGA
TCCTATGTTGCCTACCCTGTTCTATCCAACAATTGACCATCAGGTGACTGAAGGCGGTCAGGTGATTCGGGTGATGGGAT
CAATCGGTACGGCAGCCAGACACAGTGTGGTAACTGTTAACCGGGGCAATATTCATGGTGTTCAGTCCGGTCAGGTATTT
AGTGTCTATCAGCAGGGTGAAGTTGTACGTGATCCGAAAACCCGTGAACAAATCAAACTGCCAAGTCAAAAAGTTGGTAA
TATTATGATTTTCCGTACTTTTGACCAGTTGAGCTATGCTTATGTACTGGACAGCGCCCTACCTATCAAAGTAGGTTCTG
GCATCCAGGCGCCGCCAATGGCAGAGTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.526

99.476

0.702