Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q5420_RS24740 Genome accession   NZ_CP130751
Coordinates   5325937..5327154 (+) Length   405 a.a.
NCBI ID   WP_061190278.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5320937..5332154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5420_RS24715 (Q5420_24715) nadC 5321059..5321907 (+) 849 WP_003104915.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Q5420_RS24725 (Q5420_24725) - 5322088..5323446 (-) 1359 WP_235596633.1 O-antigen ligase -
  Q5420_RS24730 (Q5420_24730) - 5323538..5324002 (-) 465 WP_003107295.1 pilin -
  Q5420_RS24735 (Q5420_24735) pilB 5324233..5325933 (+) 1701 WP_003107297.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q5420_RS24740 (Q5420_24740) pilC 5325937..5327154 (+) 1218 WP_061190278.1 type II secretion system F family protein Machinery gene
  Q5420_RS24745 (Q5420_24745) pilD 5327155..5328027 (+) 873 WP_003107301.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  Q5420_RS24750 (Q5420_24750) coaE 5328024..5328635 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  Q5420_RS24755 (Q5420_24755) yacG 5328632..5328832 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  Q5420_RS24760 (Q5420_24760) - 5328869..5329078 (-) 210 WP_020750398.1 hypothetical protein -
  Q5420_RS24765 (Q5420_24765) - 5329184..5329873 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  Q5420_RS24770 (Q5420_24770) - 5329870..5330340 (-) 471 WP_003103866.1 hypothetical protein -
  Q5420_RS24775 (Q5420_24775) - 5330337..5330762 (-) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  Q5420_RS24780 (Q5420_24780) - 5330895..5331524 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  Q5420_RS24785 (Q5420_24785) - 5331521..5331970 (+) 450 WP_003094670.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44029.88 Da        Isoelectric Point: 9.8187

>NTDB_id=861381 Q5420_RS24740 WP_061190278.1 5325937..5327154(+) (pilC) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control]
MADKALKTSVFVWEGTDKRGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=861381 Q5420_RS24740 WP_061190278.1 5325937..5327154(+) (pilC) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAGAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCAGCCTTCACCATGATGG
TCATCAACATTTCCAACGTACTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCTATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAGTCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baylyi ADP1

60.784

100

0.612
  pilC Acinetobacter baumannii D1279779

60.149

99.753

0.6
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

46.04

99.753

0.459
  pilG Neisseria meningitidis 44/76-A

45.522

99.259

0.452
  pilC Vibrio cholerae strain A1552

41.481

100

0.415
  pilC Vibrio campbellii strain DS40M4

40.648

99.012

0.402
  pilC Thermus thermophilus HB27

38.155

99.012

0.378