Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I0P84_RS01515 Genome accession   NZ_AP024524
Coordinates   334154..335383 (-) Length   409 a.a.
NCBI ID   WP_004787210.1    Uniprot ID   N9P8Z0
Organism   Acinetobacter variabilis strain RYU24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329154..340383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS01490 (RYU24_02920) - 330470..330793 (+) 324 WP_004787221.1 pyrimidine/purine nucleoside phosphorylase -
  I0P84_RS01495 (RYU24_02930) rlmB 330936..331685 (+) 750 WP_175966285.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I0P84_RS01500 (RYU24_02940) - 331731..332648 (+) 918 WP_175966283.1 DMT family transporter -
  I0P84_RS01505 (RYU24_02950) coaE 332687..333292 (-) 606 WP_175966282.1 dephospho-CoA kinase -
  I0P84_RS01510 (RYU24_02960) pilD 333294..334154 (-) 861 WP_175966281.1 prepilin peptidase Machinery gene
  I0P84_RS01515 (RYU24_02970) pilC 334154..335383 (-) 1230 WP_004787210.1 type II secretion system F family protein Machinery gene
  I0P84_RS01520 (RYU24_02980) pilB 335414..337123 (-) 1710 WP_175966280.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I0P84_RS01525 (RYU24_02990) tpiA 337403..338194 (+) 792 WP_175966279.1 triose-phosphate isomerase -
  I0P84_RS01530 (RYU24_03000) secG 338208..338537 (+) 330 WP_004787204.1 preprotein translocase subunit SecG -
  I0P84_RS01560 (RYU24_03010) rimP 339502..340026 (+) 525 WP_034169753.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44858.27 Da        Isoelectric Point: 9.7923

>NTDB_id=85791 I0P84_RS01515 WP_004787210.1 334154..335383(-) (pilC) [Acinetobacter variabilis strain RYU24]
MAAVKKGQMTPIFSYEGVDRKGAKIKGELPARNMALAKVNLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVLKIKEDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=85791 I0P84_RS01515 WP_004787210.1 334154..335383(-) (pilC) [Acinetobacter variabilis strain RYU24]
ATGGCAGCAGTAAAAAAAGGCCAGATGACACCGATCTTCAGTTATGAAGGGGTTGACCGCAAAGGCGCAAAGATCAAAGG
GGAATTGCCGGCACGAAATATGGCCTTGGCAAAAGTGAACTTGCGCAAACAAGGCATTACGATCAAAACCATTCGAGAAA
AGAAAAAAAATATTCTCGAAGGTTTGATGAAGAAAAAGGTTTCCACCCTGGATATCACCATCTTCACCCGTCAGCTCGCC
ACCATGATGAAAGCGGGGGTGCCTTTAGTACAAGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAATCCATCCATGCGCGA
GGTTGTGCTTGGAATTAAAGGCGAAGTTGAAGGGGGGAATACTTTTGCCGGAGCCTTACGAAAATACCCACAATATTTCG
ATAATCTATTCTGCTCTTTGGTCGAATCTGGCGAACAATCTGGTGCTCTGGAAACCATGCTGGATCGTGTCGCGATTTAT
AAAGAAAAAAGTGAACTGTTGAAGCAAAAGATCAAAAAAGCCATGAAATATCCAGCTACAGTTATTGTAGTAGCTGTGAT
CGTGACGATTATTCTGATGGTGAAAGTAGTCCCTGTATTCCAGGACTTATTCTCTTCATTCGGTGCGGACTTACCTGCAT
TTACTAAAATGGTAGTCAATATGTCCGAATGGATGCAAAAATATTGGTTCCTTTTGATTATTGGAATTGGCGTAGTGATT
ACTGCTTTCCTTGAAGCGAAAAAGCGTAGCAAAAAATTCCGTGATTTACTGGATAAGGCTGCGCTCAAAGCACCCATCTT
TGGTGATCTGGTCTATAAAGCGATCATTGCTCGTTATAGCCGCACTCTCGCCACCACTTTTGCTGCCGGTGTGCCATTAA
TTGATGCGCTTGAATCGACTGCTGGTGCAACCAATAACGTGGTCTATGAGGAGGCGGTATTAAAAATCAAGGAAGATGTT
GCAACCGGTCAACAGCTTCAATTTGCCATGCGTGTCACCGATAAATTCCCTTCTATGGCCGTACAAATGGTTGCGATTGG
TGAAGAATCCGGCGCACTAGATGCTATGCTGGATAAAGTCGCAACCCATTATGAAAATGAAGTCGACAATGCGGTCGACG
GTTTAACTTCCATGATGGAGCCCTTGATTATGGCCATTCTTGGTGTCCTTGTTGGTGGCCTTGTTATCGCAATGTACCTT
CCAATTTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9P8Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

83.538

99.511

0.831
  pilC Pseudomonas stutzeri DSM 10701

62.563

97.311

0.609
  pilC Legionella pneumophila strain ERS1305867

53.401

97.066

0.518
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

42.402

99.756

0.423
  pilC Vibrio campbellii strain DS40M4

41.709

97.311

0.406

Multiple sequence alignment