Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QUE97_RS08980 Genome accession   NZ_AP027432
Coordinates   1269407..1270834 (+) Length   475 a.a.
NCBI ID   WP_074150192.1    Uniprot ID   -
Organism   Escherichia coli strain EC581 isolate EC581     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264407..1275834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE97_RS08950 (MUTS9_17230) pduU 1264784..1265134 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  QUE97_RS08955 (MUTS9_17240) - 1265139..1265582 (+) 444 WP_063085168.1 EutP/PduV family microcompartment system protein -
  QUE97_RS08960 (MUTS9_17250) tmaR 1265683..1266012 (-) 330 WP_000450409.1 DUF496 family protein -
  QUE97_RS08965 (MUTS9_17260) yeeA 1266184..1267242 (-) 1059 WP_050858586.1 FUSC family protein -
  QUE97_RS08970 (MUTS9_17270) sbmC 1267440..1267913 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  QUE97_RS08975 (MUTS9_17280) dacD 1268032..1269198 (-) 1167 WP_063085169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  QUE97_RS08980 (MUTS9_17290) sbcB 1269407..1270834 (+) 1428 WP_074150192.1 exodeoxyribonuclease I Machinery gene
  QUE97_RS08985 tnpA 1270947..1271405 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  QUE97_RS08990 (MUTS9_17310) plaP 1271619..1272977 (-) 1359 WP_248787450.1 putrescine/proton symporter PlaP -
  QUE97_RS08995 yoeI 1272967..1273029 (-) 63 WP_010723108.1 membrane protein YoeI -
  QUE97_RS09000 (MUTS9_17320) yeeY 1273244..1274173 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  QUE97_RS09005 (MUTS9_17330) yeeZ 1274219..1275043 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  QUE97_RS09010 (MUTS9_17340) yoeB 1275126..1275380 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  QUE97_RS09015 (MUTS9_17350) yefM 1275377..1275628 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4720

>NTDB_id=85792 QUE97_RS08980 WP_074150192.1 1269407..1270834(+) (sbcB) [Escherichia coli strain EC581 isolate EC581]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDV
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=85792 QUE97_RS08980 WP_074150192.1 1269407..1270834(+) (sbcB) [Escherichia coli strain EC581 isolate EC581]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCTGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGTC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment