Detailed information NTG0857890

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: Q3F87_RS07945
• Genome accession: NZ_CP130328
• Coordinates: 1441037..1442233 (+)
• Length: 398 a.a.
• NCBI ID: WP_302700572.1
• Uniprot ID: -
• Organism: Acinetobacter variabilis strain TB2-2B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1436037..1447233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3F87_RS07930 (Q3F87_07930)	-	1437088..1437612 (+)	525	WP_159122907.1	hypothetical protein	-
Q3F87_RS07935 (Q3F87_07935)	-	1438151..1439200 (+)	1050	WP_302700570.1	3-deoxy-7-phosphoheptulonate synthase	-
Q3F87_RS07940 (Q3F87_07940)	pilU	1439456..1440634 (+)	1179	WP_302700571.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Q3F87_RS07945 (Q3F87_07945)	pilU	1441037..1442233 (+)	1197	WP_302700572.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Q3F87_RS07950 (Q3F87_07950)	-	1442309..1443484 (-)	1176	WP_179992609.1	MFS transporter	-
Q3F87_RS07955 (Q3F87_07955)	gcvH	1443737..1444111 (-)	375	WP_104426083.1	glycine cleavage system protein GcvH	-
Q3F87_RS07960 (Q3F87_07960)	-	1444194..1445222 (-)	1029	WP_104426084.1	AraC family transcriptional regulator	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 44974.50 Da
• Isoelectric Point: 6.5072

>NTDB_id=857890 Q3F87_RS07945 WP_302700572.1 1441037..1442233(+) (pilU) [Acinetobacter variabilis strain TB2-2B]
MFTAELLDEAKKFMHHMLTKVVEYGGSDLFITADFPPSIKHQGLMKPFGQQTLTAEKTKLFAYSLMNDKQRQEFEAELEC
NFAITVPGVSRFRVNVFVQQLQVGMVIRTITAEIPNFQKLKLPESLKHVIMEKRGLVLVVGGTGSGKSTSLAAMIDYRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
SNNANQTLDRIINFFPEERRNQLLMDLSSNMKAIISQRLIRTQDGKGRRAAIEIMLNTPLISDLILKGEFHELKAIMGKS
RELGMQTFDQALFDLYNEGAISYEEALRNADSTNELRLQIKLKSNRQDNPAVGEATQFTMMQEPKAEEKEQENTSASE

Nucleotide

• Length: 1197 bp

>NTDB_id=857890 Q3F87_RS07945 WP_302700572.1 1441037..1442233(+) (pilU) [Acinetobacter variabilis strain TB2-2B]
ATGTTCACGGCAGAACTGTTGGACGAAGCAAAAAAATTCATGCATCACATGCTGACCAAAGTAGTGGAATATGGGGGCTC
AGACTTATTTATTACCGCAGATTTTCCACCGAGTATTAAACATCAGGGCTTAATGAAGCCATTTGGACAACAGACTTTAA
CTGCTGAAAAAACCAAACTGTTCGCTTATAGCTTGATGAATGATAAACAGCGTCAAGAGTTTGAAGCTGAACTAGAATGT
AACTTCGCGATTACTGTACCGGGTGTATCGCGCTTCCGGGTAAATGTTTTTGTACAACAGCTTCAGGTCGGGATGGTAAT
CCGGACCATTACGGCAGAAATTCCAAATTTCCAGAAACTGAAATTACCAGAATCATTGAAACACGTGATTATGGAAAAAC
GCGGTCTGGTACTGGTTGTAGGAGGAACGGGTTCAGGTAAATCGACCTCTCTGGCAGCGATGATTGACTACCGCAATGAA
AATTCGGCGGGGCATATCATTACCGTGGAAGATCCGGTGGAATATGTACATAAACACAAGAAATCCATGATTACTCACCG
TGAAGTTGGAGTCGATTGCCATTCCTGGCACAATGCGCTGAAAAATACCTTGCGTCAGGCCCCCGATGTAATTCTGATCG
GTGAGATTCGGGATACCGAAACCATGGAACACGCAATTGCCTTTGCTGAAACCGGACATTTATGTTTGGGTACACTGCAT
TCCAATAATGCTAACCAGACTTTGGACCGGATTATTAACTTCTTCCCGGAAGAACGCCGTAATCAGTTATTAATGGATTT
ATCTTCGAATATGAAGGCGATTATTTCCCAGCGTCTGATTCGTACTCAGGATGGAAAAGGGCGTCGGGCTGCAATTGAAA
TCATGTTAAATACACCTTTGATTTCTGATCTGATTCTAAAAGGTGAGTTTCATGAGCTGAAAGCCATTATGGGCAAATCT
CGTGAACTGGGCATGCAGACTTTCGATCAGGCCTTATTTGACCTGTATAACGAGGGTGCGATTTCTTATGAGGAAGCATT
GCGTAATGCTGATTCGACTAATGAATTACGTTTACAGATCAAGCTGAAAAGCAACCGCCAGGATAATCCTGCTGTTGGAG
AAGCAACACAATTCACGATGATGCAAGAACCGAAAGCTGAAGAAAAAGAACAAGAAAATACTTCAGCATCTGAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.92	87.437	0.533
pilU	Acinetobacter baylyi ADP1	55.908	87.186	0.487
pilU	Vibrio cholerae strain A1552	51.781	91.709	0.475
pilT	Pseudomonas aeruginosa PAK	44.172	81.91	0.362
pilT	Acinetobacter nosocomialis M2	43.636	82.915	0.362
pilT	Acinetobacter baumannii D1279779	43.636	82.915	0.362
pilT	Acinetobacter baumannii strain A118	43.636	82.915	0.362