Detailed information NTG0857889

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: Q3F87_RS07940
• Genome accession: NZ_CP130328
• Coordinates: 1439456..1440634 (+)
• Length: 392 a.a.
• NCBI ID: WP_302700571.1
• Uniprot ID: -
• Organism: Acinetobacter variabilis strain TB2-2B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1434456..1445634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3F87_RS07925 (Q3F87_07925)	-	1435745..1436857 (+)	1113	WP_180053222.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-
Q3F87_RS07930 (Q3F87_07930)	-	1437088..1437612 (+)	525	WP_159122907.1	hypothetical protein	-
Q3F87_RS07935 (Q3F87_07935)	-	1438151..1439200 (+)	1050	WP_302700570.1	3-deoxy-7-phosphoheptulonate synthase	-
Q3F87_RS07940 (Q3F87_07940)	pilU	1439456..1440634 (+)	1179	WP_302700571.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Q3F87_RS07945 (Q3F87_07945)	pilU	1441037..1442233 (+)	1197	WP_302700572.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Q3F87_RS07950 (Q3F87_07950)	-	1442309..1443484 (-)	1176	WP_179992609.1	MFS transporter	-
Q3F87_RS07955 (Q3F87_07955)	gcvH	1443737..1444111 (-)	375	WP_104426083.1	glycine cleavage system protein GcvH	-
Q3F87_RS07960 (Q3F87_07960)	-	1444194..1445222 (-)	1029	WP_104426084.1	AraC family transcriptional regulator	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 44346.76 Da
• Isoelectric Point: 6.4331

>NTDB_id=857889 Q3F87_RS07940 WP_302700571.1 1439456..1440634(+) (pilU) [Acinetobacter variabilis strain TB2-2B]
MYTTELLDEARKFMHHMLTKVVEYGGSDLFITADFPPSIKQQGLMKPFGQQKLTADKTRLFAYALMNERQIQEFESVMEC
NFSISIPGVSRFRVNVFQQQHNVGMVIRVITTDIPSFEQLGLPASLQQVIMQKRGLVLVVGATGVGKSTTLAAMIDYRNT
HTEGHIITIEDPVEYVYQHKNSMITQREIGVDCVSWHNALINTMRQAPDVIVIGEIRDTDSMEHAIAFAESGHLCLATLH
SNNADQALDRIINFFPEERRNQLLLDLSANIKAVISQRLIRTEDGKGRRAAVEILQNTPLVSDLIRKGEFHELKTIMARS
RELGMQTFDQALFDLYNQGIISYEEALRNADSSNELRLQIKLKSSRINPVLQTENAQISLLEQSRSRALSPD

Nucleotide

• Length: 1179 bp

>NTDB_id=857889 Q3F87_RS07940 WP_302700571.1 1439456..1440634(+) (pilU) [Acinetobacter variabilis strain TB2-2B]
ATGTATACAACTGAATTGCTCGATGAAGCACGTAAATTTATGCACCATATGCTGACCAAAGTCGTTGAATATGGTGGTTC
CGATCTTTTTATTACAGCTGATTTCCCGCCCAGTATCAAACAGCAAGGGTTAATGAAACCGTTTGGCCAGCAGAAACTCA
CAGCCGATAAGACCCGTTTGTTTGCTTATGCCTTGATGAATGAGCGACAGATTCAGGAATTTGAATCGGTGATGGAATGC
AATTTTAGTATTAGCATCCCGGGCGTGTCGCGTTTCCGGGTTAATGTCTTCCAGCAACAGCACAATGTAGGCATGGTGAT
TCGGGTCATTACGACAGATATTCCAAGCTTTGAGCAGTTAGGCTTACCAGCTTCATTGCAACAGGTCATCATGCAGAAAC
GTGGTTTGGTGCTGGTAGTTGGTGCAACGGGTGTCGGGAAATCGACTACATTGGCAGCCATGATTGATTATCGTAATACG
CATACTGAAGGGCATATTATTACGATCGAAGACCCGGTGGAATATGTCTATCAGCATAAAAACTCGATGATCACCCAGCG
TGAAATTGGTGTAGATTGCGTTTCCTGGCACAATGCACTGATTAATACCATGCGGCAGGCACCTGACGTTATCGTGATTG
GCGAAATCAGGGATACAGACAGTATGGAGCATGCAATTGCCTTTGCTGAATCTGGCCATTTATGTCTTGCAACACTCCAT
TCTAATAATGCCGATCAGGCACTGGACCGGATTATTAACTTCTTTCCAGAAGAACGCCGTAATCAGTTACTGCTAGATTT
ATCAGCTAATATCAAAGCCGTGATTTCTCAGCGGCTAATTCGCACTGAAGATGGTAAAGGTCGTCGGGCTGCGGTAGAAA
TTCTGCAAAATACCCCTTTAGTTTCTGACCTGATTCGTAAAGGTGAATTCCATGAACTTAAAACGATTATGGCTCGTTCG
CGGGAACTGGGCATGCAAACCTTTGATCAGGCATTATTTGATTTATATAACCAAGGCATTATTTCTTATGAAGAAGCCTT
GCGTAATGCAGACTCCAGCAATGAATTACGTTTACAAATCAAATTAAAGAGTAGTCGTATCAATCCTGTTTTACAGACAG
AAAATGCCCAGATTTCACTTCTGGAACAGTCCAGATCGCGTGCACTTTCACCTGACTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (64-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.649	95.918	0.543
pilU	Acinetobacter baylyi ADP1	54.648	90.561	0.495
pilU	Vibrio cholerae strain A1552	51.831	90.561	0.469
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.353	86.735	0.367